Description: The medium is defined as a cube with cube-shaped voxels, typically a 400x400x400 voxel cube. Each voxel is assigned an integer value which identifies a particular type of tissue with unique optical properties of μa, μs, and g. The simulation yields a map of the relative fluence rate φ [W/cm2 per W delivered] or [cm-2] throughout the cube.
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paradyn
.......\src
.......\...\Crib
.......\...\Makefile
.......\...\Makefile.liberty
.......\...\Makefile.linux
.......\...\Makefile.origin
.......\...\Makefile.ross
.......\...\Makefile.serial
.......\...\Makefile.sgi
.......\...\Makefile.sp4
.......\...\Makefile.t3e
.......\...\Makefile.tflop
.......\...\STUBS
.......\...\.....\mpif.h
.......\...\.....\Makefile
.......\...\.....\mpi_c.c
.......\...\.....\mpi_fortran.f
.......\...\.....\mpi.h
.......\...\clear.f
.......\...\constrain.f
.......\...\control.f
.......\...\create_atoms.f
.......\...\create_velocities.f
.......\...\diagnostic.f
.......\...\dump_atoms.f
.......\...\dump_stresses.f
.......\...\dump_velocities.f
.......\...\error.f
.......\...\finish.f
.......\...\force.f
.......\...\input.f
.......\...\integrate.f
.......\...\interpolate.f
.......\...\memory.f
.......\...\minimize.f
.......\...\misc.f
.......\...\neighbor.f
.......\...\paradyn.f
.......\...\random.f
.......\...\read_atoms.f
.......\...\read_potential.f
.......\...\read_velocities.f
.......\...\scale_atoms.f
.......\...\scale_velocities.f
.......\...\setup_parallel.f
.......\...\start.f
.......\...\stats.f
.......\...\string.f
.......\...\userforce.f
.......\...\gs.c
.......\...\my_malloc.c
.......\...\paradyn.h
.......\...\diagnostic.gb
.......\...\diagnostic.hold
.......\tools
.......\.....\Makefile
.......\.....\dyn2para.f
.......\.....\randomize.f
.......\potentials
.......\..........\agu3
.......\..........\aljnp
.......\..........\alu9
.......\..........\alvtr
.......\..........\auu3
.......\..........\cusmf7
.......\..........\cuu3
.......\..........\cuu6
.......\..........\nialhjea
.......\..........\nismf7
.......\..........\niu3
.......\..........\pdu3
.......\..........\ptu3
.......\examples
.......\........\cu_bulk.in
.......\........\cu_bulk.log.example.origin.4
.......\........\cu_bulk.log.example.pgon.32
.......\........\cu_bulk.log.example.sgi.1
.......\........\gb_diff.atoms
.......\........\gb_diff.diff.example.origin.4
.......\........\gb_diff.diff.example.pgon.32
.......\........\gb_diff.diff.example.sgi.1
.......\........\gb_diff.in
.......\........\gb_diff.log.example.origin.4
.......\........\gb_diff.log.example.pgon.32
.......\........\gb_diff.log.example.sgi.1
.......\........\gb_random.atoms
.......\........\gb_random.diff.example.origin.4
.......\........\gb_random.diff.example.pgon.32
.......\........\gb_random.diff.example.sgi.1
.......\........\gb_random.in
.......\........\gb_random.log.example.origin.4
.......\........\gb_random.log.example.pgon.32
.......\........\gb_random.log.example.sgi.1
.......\........\min.atoms
.......\........\min.dump.example.origin.4
.......\........\min.dump.example.pgon.32
.......\........\min.dump.example.sgi.1
.......\........\min.in
.......\........\min.log.example.origin.4
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