UGENE is a free cross-platform genome analysis suite. Main features: Multiple sequence alignment using MUSCLE 3,4 and KAlign HMM profiles build and search, based on the source of HMMER 2 and HMMER 3 PCR Primers design using Primer 3 Protein secondary structure prediction using GOR IV and PSIPRED Phylogenetic analysis with Phylip Search for restriction enzymes and integration with REBASE Extremely fast repeat finder DNA reference assembly using Bowtie Search for transcription factor binding sites using SITECON Protein back translation ORF finder Complete Smith-Waterman algorithm implementation Comparing genomes using dotplot view.

ugene_1_7_0_win_x86.exe

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