MS-Clustering is designed to rapidly cluster large MS/MS datasets. The program merges similar spectra (having similar m/z values ?within a given tolerance), and creates a single consensus spectrum as a representative. The input formats accepted are: dta, mgf, mzXML. The output format is mgf.

Packet : 45666019mscluster.rar filelist
MSCluster.exe
Models\All_PTMs.txt
Models\CID_IT_TRYP.txt
Models\CID_IT_TRYP_break_score.txt
Models\CID_IT_TRYP_config.txt
Models\CID_IT_TRYP_EDGE\CID_IT_TRYP_edge_1_0_0.txt
Models\CID_IT_TRYP_EDGE\CID_IT_TRYP_edge_1_0_1.txt
Models\CID_IT_TRYP_EDGE\CID_IT_TRYP_edge_1_0_2.txt
Models\CID_IT_TRYP_EDGE\CID_IT_TRYP_edge_1_1_0.txt
Models\CID_IT_TRYP_EDGE\CID_IT_TRYP_edge_1_1_1.txt
Models\CID_IT_TRYP_EDGE\CID_IT_TRYP_edge_1_1_2.txt
Models\CID_IT_TRYP_EDGE\CID_IT_TRYP_edge_1_2_0.txt
Models\CID_IT_TRYP_EDGE\CID_IT_TRYP_edge_1_2_1.txt
Models\CID_IT_TRYP_EDGE\CID_IT_TRYP_edge_1_2_2.txt
Models\CID_IT_TRYP_EDGE\CID_IT_TRYP_edge_2_0_0.txt
Models\CID_IT_TRYP_EDGE\CID_IT_TRYP_edge_2_0_1.txt
Models\CID_IT_TRYP_EDGE\CID_IT_TRYP_edge_2_0_2.txt
Models\CID_IT_TRYP_EDGE\CID_IT_TRYP_edge_2_1_0.txt
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Models\CID_IT_TRYP_EDGE\CID_IT_TRYP_edge_2_1_2.txt
Models\CID_IT_TRYP_EDGE\CID_IT_TRYP_edge_2_2_0.txt
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Models\CID_IT_TRYP_EDGE\CID_IT_TRYP_edge_2_3_0.txt
Models\CID_IT_TRYP_EDGE\CID_IT_TRYP_edge_2_3_1.txt
Models\CID_IT_TRYP_EDGE\CID_IT_TRYP_edge_2_3_2.txt
Models\CID_IT_TRYP_EDGE\CID_IT_TRYP_edge_2_4_0.txt
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Models\CID_IT_TRYP_EDGE\CID_IT_TRYP_edge_2_4_2.txt
Models\CID_IT_TRYP_EDGE\CID_IT_TRYP_edge_2_5_0.txt
Models\CID_IT_TRYP_EDGE\CID_IT_TRYP_edge_2_5_1.txt
Models\CID_IT_TRYP_EDGE\CID_IT_TRYP_edge_2_5_2.txt
Models\CID_IT_TRYP_EDGE\CID_IT_TRYP_edge_3_0_0.txt
Models\CID_IT_TRYP_EDGE\CID_IT_TRYP_edge_3_0_1.txt
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Models\CID_IT_TRYP_EDGE\CID_IT_TRYP_edge_3_3_0.txt
Models\CID_IT_TRYP_EDGE\CID_IT_TRYP_edge_3_3_1.txt
Models\CID_IT_TRYP_EDGE\CID_IT_TRYP_edge_3_3_2.txt
Models\CID_IT_TRYP_EDGE\CID_IT_TRYP_edge_model.txt
Models\CID_IT_TRYP_EDGE
Models\CID_IT_TRYP_fragments.txt
Models\CID_IT_TRYP_fragment_sets.txt
Models\CID_IT_TRYP_PMCR.txt
Models\CID_IT_TRYP_SQS.txt
Models\LTQ_COMP\IT_TRYP_end_freq_1.txt
Models\LTQ_COMP\IT_TRYP_end_freq_2.txt
Models\LTQ_COMP\IT_TRYP_end_freq_3.txt
Models\LTQ_COMP\IT_TRYP_mid_freq_1.txt
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Models\LTQ_COMP\IT_TRYP_start_freq_1.txt
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Models\LTQ_COMP\IT_TRYP_start_freq_3.txt
Models\LTQ_COMP
Models\PepNovo_PTMs.txt
Models
src\AdvancedScoreModel.cpp
src\AdvancedScoreModel.h
src\AdvancedScoreModel_fill.cpp
src\AdvancedScoreModel_frag.cpp
src\AdvancedScoreModel_regional.cpp
src\AnnotatedSpectrum.h
src\AnnotatedSpecturm.cpp
src\auxfun.cpp
src\auxfun.h
src\base64.cpp
src\base64.h
src\BasicDataStructs.cpp
src\BasicDataStructs.h
src\cluster_main.cpp
src\Config.cpp
src\Config.h
src\ConversionTables.cpp
src\ConversionTables.h
src\DeNovoDp.cpp
src\DeNovoDp.h
src\DeNovoPartModel.cpp
src\DeNovoRankModel.h
src\DeNovoRankScore.cpp
src\DeNovoRankScore.h
src\DeNovoRankTrain.cpp
src\DeNovoSolutions.cpp
src\DeNovoSolutions.h
src\DiscretePeakModel.cpp
src\DiscretePeakModel.h
src\EdgeModel.cpp
src\EdgeModel.h
src\FileManagement.cpp
src\FileManagement.h
src\Fragmentation.cpp
src\Fragmentation.h
src\FragmentSelection.cpp
src\FragmentSelection.h
src\FragProbTable.cpp
src\FragProbTable.h
src\Homeomorphic.cpp
src\includes.h
src\Isotopes.cpp
src\Isotopes.h
src\Makefile
src\MassRangeMap.cpp
src\ME_REG.cpp
src\ME_REG.h
src\ME_Regression_DataSet.cpp
src\ME_Regression_Model.cpp
src\Model.cpp
src\Model.h
src\MultiPath.cpp
src\MZXML_parsing.cpp
src\PartitionModel.cpp
src\PeakRankModel.cpp
src\PeakRankModel.h
src\PeakRankPartialDenovo.cpp
src\PeakRank_advanced.cpp
src\PeakRank_combined.cpp
src\PeakRank_combined_dnv.cpp
src\PeakRank_simple.cpp
src\PeptideComp.cpp
src\PeptideComp.h
src\PMCSQS.cpp
src\PMCSQS.h
src\PMCSQS_model.cpp
src\PMC_rank.cpp
src\prepare_ScoreTrain_run.pl
src\PrmGraph.cpp
src\PrmGraph.h
src\PTM_stuff.cpp
src\QCBasicSpecReader.cpp
src\QCDAT.cpp
src\QCDotProdSim.cpp
src\QCoutputter.cpp
src\QCStatics.cpp
src\QuickClustering.cpp
src\QuickClustering.h
src\QuickClusteringSpectra.cpp
src\RankBoost.cpp
src\RankBoost.h
src\RankBoostSample.cpp
src\RegionalPepNovoModel.cpp
src\RegionalPepNovoModel.h
src\RegularRankModel.cpp
src\RegularRankModel.h
src\ReScoreDB.cpp
src\run_ScoreTrain_on_grid.pl
src\SiteParseRun.cpp
src\Spectrum.cpp
src\Spectrum.h
src
copyright.txt

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