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Description: unix或linux下的DNA分析软件源码
其功能如下
1. Edit up to 256 peptide or DNA sequences simultaneously.
2. Translates DNA->protein click next to display next frame.
3. Dot matrix plot of any 2 sequences.
4. Rudimentary amino acid statistics (MW and amino acid percentage)
5. Saves matrix plot as PBM image format.
6. Sequence reversal.
7. Creates alignment file for highlight (below).
8. Tab key toggles editing of next sequence.
-unix or linux DNA analysis of the software source code of its functions is as follows : 1. Edit up to 256 peptide or DNA sequences simultaneously. 2 . Translates DNA -
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Size: 72904 |
Author: 李华明 |
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Description: CAUSA: 基于密码子-氨基酸联合序列比对构建高精确度分子进化树 生物信息学、基因组学（包括功能基因组学和比较基因组学）的主要目的是研究生物基因、蛋白和基因组的结构和功能，并重构生物基因、蛋白和基因组的进化历史。多序列比对（multiple sequence alignment, MSA)是DNA和蛋白质分子进化分析、以及结构与功能研究的基本工具。目前多序列比对已经有很多方法，如clustalw, MUSCLE, MAFFT, T-Coffee, PRANK，等等，但序列比对依然容易产生系统性偏差，导致进化分析错误，甚至造成基因、蛋白和基因组结构和功能信息的误读。 一直以来，DNA和蛋白序列比对是分开进行的。学者们认为与蛋白质序列相比，相应的DNA序列中系统发育信号消失的速度更快。因此一般在氨基酸序列水平进行比对和进化分析。近年来，最新研究表明用基于密码子的多序列比对（codon alignment, CA)能够构建更准确的分子进化树。但CA算法计算复杂度非常大，速度很慢，而且我们分析表明其错误率依然很大。 最近，我们提出了一种新的多序列比对和进化分析算法：密码子-氨基酸联合序列比对（Codon and amino acid unified sequence alignment, CAUSA)算法，将DNA和蛋白质序列组合成为“密码子-氨基酸联合序列”（Codon and amino acid unified sequences），并将其用于序列比对和进化分析。理论分析和实例证明，与通常的仅用核酸或蛋白序列的方法相比，CAUSA算法通过整合和挖掘分别埋藏在DNA和蛋白质序列中的信息，提高了多序列比对的准确度，比CA更加准确，避免了在系统发育分析中普遍发生的错误,而且计算速度大大加快。 CAUSA软件，最初被称为DNA+Pro (最新版本1.16），免费下载使用：
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Size: 65454 |
Author: ouqd@hotmail.com |
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Description: unix或linux下的DNA分析软件源码
其功能如下
1. Edit up to 256 peptide or DNA sequences simultaneously.
2. Translates DNA->protein click next to display next frame.
3. Dot matrix plot of any 2 sequences.
4. Rudimentary amino acid statistics (MW and amino acid percentage)
5. Saves matrix plot as PBM image format.
6. Sequence reversal.
7. Creates alignment file for highlight (below).
8. Tab key toggles editing of next sequence.
-unix or linux DNA analysis of the software source code of its functions is as follows : 1. Edit up to 256 peptide or DNA sequences simultaneously. 2 . Translates DNA-
Platform: |
Size: 72704 |
Author: 李华明 |
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Description: 这是一个计算氨基酸物理化学性质的程序，可以用于研究蛋白质的性质-This is a calculation of physical and chemical properties of amino acid procedures, can be used to study the nature of protein
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Size: 2048 |
Author: |
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Description: 计算不长于23个氨基酸的多肽的分子量，识别20种常规氨基酸，分子量结果在序列输入完成后自动生成-Calculation of not longer than 23 amino acid peptide of molecular weight, identification of 20 conventional amino acids, molecular weight results in the sequence of input automatically generated after the completion of
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Size: 18432 |
Author: wu |
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Description: 生命蛋白质是由若干种氨基酸经不同的方式组合而成。在实验中，为了分析某个生命蛋白质的分子组成，通常用质谱实验测定其分子量x (正整数)，然后将分子量x分解为n个已知分子量a[i](i=1,.......,n)氨基酸的和的形式。某实验室所研究的问题中：
n=18, x 1000
a[i](i=1,.......,18)分别为57, 71, 87, 97, 99, 101, 103, 113, 114, 115, 128, 129, 131, 137, 147, 156, 163, 186
要求针对该实验室拥有或不拥有计算机的情况作出解答。
该题目的解答，将输出所有解及其个数。-Life by a number of protein amino acids by a combination of different ways. In the experiment, in order to analyze the life of a molecule composed of protein, usually measured by mass spectrometry molecular weight of x (positive integer), then the molecular weight x is decomposed into n known molecular weight of a [i] (i = 1,. ......, n) of amino acids and form. A laboratory study of the question: n = 18, x 1000a [i] (i = 1 ,......., 18) were 57, 71, 87, 97, 99, 101, 103, 113 , 114, 115, 128, 129, 131, 137, 147, 156, 163, 186 requests for the laboratory owned or not owned computer to answer. The subject answers, the output and the number of all solutions.
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Size: 1024 |
Author: 棍子 |
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Description: 可以直接从fasta格式的文件中读取氨基酸序列或者碱基序列，方便matlab读取-Directly from the FASTA file format to read the amino acid sequence or base sequence, to facilitate reading matlab
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Size: 8192 |
Author: kale |
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Description: 这是使用Amino并发编程Java API库编写的List线程安全的Java程序。-This is complicated by the use of Amino Programming Java API library prepared List of Java thread-safe procedure.
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Size: 1024 |
Author: lizhx |
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Description: 计算一个氨基酸序列中各位点的氨基酸被其他氨基酸替换的突变打分。-Calculation of an amino acid sequence of amino acids that point by other points of amino acid substitution mutation.
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Size: 9216 |
Author: 皓月红 |
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Description: 蛋白质中氨基酸名称的转换,将三字母的氨基酸转换成单字母，单字母的转换成三字母-amino acid name conversion
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Size: 4930560 |
Author: caoze |
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Description: Amino SDK Documentation
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Size: 581632 |
Author: Alant |
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Description: Amino Remote Controls
Configuration Guide
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Size: 499712 |
Author: Alant |
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Description: JMACX-0.9.35. for Amino STB
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Size: 543744 |
Author: Huy Nguyen |
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Description: This program aligns amino acid sequences in proteins and shows the possible best path of the said sequence.
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Size: 1024 |
Author: isabelle |
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Description:
When we get a DNA sequence, we want to see what kind of amino acid sequence it codes. The DNA sequence may not be a complete gene sequence and we may do not know whether it is a coding stand or non-coding strand. So this program try in 6 different translation way: fram +1 ,+2, +3 and frame -1,-2,-3. For codon, there are three different kind of them: stop codon, start codon and normal codon. The start codon and normal both encode amino acid but the stop codon only functions as a stop sign of translation. The translation machinery stops where it encounters a stop codon. But our program still read the codon even after it encounters a stop codon for the DNA sequence is not really part of gene segment.-
When we get a DNA sequence, we want to see what kind of amino acid sequence it codes. The DNA sequence may not be a complete gene sequence and we may do not know whether it is a coding stand or non-coding strand. So this program try in 6 different translation way: fram+1 ,+2,+3 and frame-1,-2,-3. For codon, there are three different kind of them: stop codon, start codon and normal codon. The start codon and normal both encode amino acid but the stop codon only functions as a stop sign of translation. The translation machinery stops where it encounters a stop codon. But our program still read the codon even after it encounters a stop codon for the DNA sequence is not really part of gene segment.
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Size: 3072 |
Author: hsingjun |
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Description: This document describe how to configure amino settopboxes
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Size: 359424 |
Author: zeinab |
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Description: A prograom clculated inter-helica angle between neighbor a-hlix of a given protein PDB file. Notice the helix should contain at least 5 amino acid.
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Size: 18432 |
Author: Jsbach |
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Description: amino SDK for embedded devices
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Size: 791552 |
Author: zulus |
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Description: configuration guide for amino based STB
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Size: 2956288 |
Author: zulus |
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Description: 输入一条字符串（由A、T、G、C构成）表式DNA的一条链，输出DNA中与之对应的另外一条链对应mRNA的结构(字符串表示)由mRNA控制合成的蛋白质的氨基酸序列-Enter a string (the A, T, G, C form) form a type of DNA chain, the output of the other DNA in the corresponding mRNA corresponding to the structure of a chain (string representation) controlled by the mRNA synthesis of the amino acid sequence
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Size: 1024 |
Author: |
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