File list (Check if you may need any files):
args.cc
args.h
bayesian.cc
bayesian.h
binary.h
boa.cc
boa.h
checkCycles.cc
checkCycles.h
computeCounts.cc
computeCounts.h
COPYRIGHT
examples
........\input.3deceptive.30
........\input.3deceptive.60
........\input.3deceptive.90
........\input.3decOverlap.31
........\input.3decOverlap.61
........\input.3decOverlap.91
........\input.bipolar.30
........\input.bipolar.60
........\input.bipolar.90
........\input.onemax.30
........\input.onemax.60
........\input.onemax.90
........\input.quadratic.30
........\input.quadratic.60
........\input.quadratic.90
........\input.trap5.30
........\input.trap5.60
........\input.trap5.90
........\output.3deceptive.30.fitness
........\output.3deceptive.30.log
........\output.3deceptive.30.model
........\output.3deceptive.60.fitness
........\output.3deceptive.60.log
........\output.3deceptive.60.model
........\output.3deceptive.90.fitness
........\output.3deceptive.90.log
........\output.3deceptive.90.model
........\output.3decOverlap.31.fitness
........\output.3decOverlap.31.log
........\output.3decOverlap.31.model
........\output.3decOverlap.61.fitness
........\output.3decOverlap.61.log
........\output.3decOverlap.61.model
........\output.3decOverlap.91.fitness
........\output.3decOverlap.91.log
........\output.3decOverlap.91.model
........\output.bipolar.30.fitness
........\output.bipolar.30.log
........\output.bipolar.30.model
........\output.bipolar.60.fitness
........\output.bipolar.60.log
........\output.bipolar.60.model
........\output.bipolar.90.fitness
........\output.bipolar.90.log
........\output.bipolar.90.model
........\output.onemax.30.fitness
........\output.onemax.30.log
........\output.onemax.30.model
........\output.onemax.60.fitness
........\output.onemax.60.log
........\output.onemax.60.model
........\output.onemax.90.fitness
........\output.onemax.90.log
........\output.onemax.90.model
........\output.quadratic.30.fitness
........\output.quadratic.30.log
........\output.quadratic.30.model
........\output.quadratic.60.fitness
........\output.quadratic.60.log
........\output.quadratic.60.model
........\output.quadratic.90.fitness
........\output.quadratic.90.log
........\output.quadratic.90.model
........\output.trap5.30.fitness
........\output.trap5.30.log
........\output.trap5.30.model
........\output.trap5.60.fitness
........\output.trap5.60.log
........\output.trap5.60.model
........\output.trap5.90.fitness
........\output.trap5.90.log
........\output.trap5.90.model
fitness.cc
fitness.h
getFileArgs.cc
getFileArgs.h
graph.cc
graph.h
header.cc
header.h
help.cc
help.h
K2.cc
K2.h
main.cc
Makefile
memalloc.h