Description: Run Application
===============
Windows: Doubleclick the BicAT_v2.2.jar file
Linux: type ./run_linux to start the application.
Solaris: type ./run_solaris to start the application.
possible problems:
==================
Make sure the environment variables are properly set!
CLASSPATH (should be ok)
LD_LIBRARY_PATH = ./lib/linux
./lib/solaris
Sample Data Files
=================
dataSample_1.txt- use offsets (1,1) (data are already logarithmized)
dataSample_2.txt- use offsets (1,1)
To Search:
File list (Check if you may need any files):
BicAT_v2.22
...........\BicAT_v2.22.jar
...........\bimax.dll
...........\cc.dll
...........\isa.dll
...........\jfreechart-0.9.21.jar
...........\lib
...........\...\floyd.jar
...........\...\gnujaxp.jar
...........\...\jcommon-0.9.6.jar
...........\...\jfreechart-0.9.21.jar
...........\...\junit.jar
...........\...\linux
...........\...\.....\libbimax.so
...........\...\.....\libbimax.so_old
...........\...\.....\libcc.so
...........\...\.....\libisa.so
...........\...\.....\libstdc++.so.6
...........\...\.....\libxmotifs.so
...........\...\servlet.jar
...........\...\solaris
...........\...\.......\libbimax.so
...........\...\.......\libcc.so
...........\...\.......\libisa.so
...........\...\.......\libxmotifs.so
...........\libbimax.jnilib
...........\libcc.jnilib
...........\libisa.jnilib
...........\libxmotifs.jnilib
...........\README.txt
...........\run_linux.sh
...........\run_solaris.sh
...........\sampleData
...........\..........\dataSample_1.txt
...........\..........\dataSample_2.txt
...........\sources
...........\.......\bicat
...........\.......\.....\algorithms
...........\.......\.....\..........\bimax
...........\.......\.....\..........\.....\Biclustering.java
...........\.......\.....\..........\.....\BiMax.java
...........\.......\.....\..........\clustering
...........\.......\.....\..........\..........\EmptyClusterException.java
...........\.......\.....\..........\..........\GraphicUtil.java
...........\.......\.....\..........\..........\HCL.java
...........\.......\.....\..........\..........\KMeans.java
...........\.......\.....\..........\..........\KMeansClusters.java
...........\.......\.....\..........\..........\Util.java
...........\.......\.....\..........\opsm
...........\.......\.....\..........\....\BendorReloadedAlgorithm.java
...........\.......\.....\..........\....\BendorReloadedAlgorithm.java~1~
...........\.......\.....\..........\....\BendorReloadedModel.java
...........\.......\.....\..........\....\BendorReloadedModelEvaluation.java
...........\.......\.....\..........\....\BendorReloadedModelExtension.java
...........\.......\.....\..........\....\BendorReloadedModelInitialization.java
...........\.......\.....\..........\....\BendorReloadedModelRecord.java
...........\.......\.....\..........\....\Pmr2listConverter.java
...........\.......\.....\biclustering
...........\.......\.....\............\Bicluster.java
...........\.......\.....\............\Dataset.java
...........\.......\.....\gui
...........\.......\.....\...\ActionManager.java
...........\.......\.....\...\AnalysisPane.java
...........\.......\.....\...\BicatGui.java
...........\.......\.....\...\GenePairTableModel.java
...........\.......\.....\...\GraphicPane.java
...........\.......\.....\...\GraphicPane.jbx
...........\.......\.....\...\PicturePane.java
...........\.......\.....\...\PopupListener.java
...........\.......\.....\...\TableSorter.java
...........\.......\.....\...\window
...........\.......\.....\...\......\About.java
...........\.......\.....\...\......\AuxDialog.java
...........\.......\.....\...\......\BiclusterInfo.java
...........\.......\.....\...\......\Filter.java
...........\.......\.....\...\......\GenePairAnalysis.java
...........\.......\.....\...\......\HammingDistanceBC.java
...........\.......\.....\...\......\LoadData.java
...........\.......\.....\...\......\PreprocessData.java
...........\.......\.....\...\......\RunDialog_BiMax.java
...........\.......\.....\...\......\RunDialog_CC.java
...........\.......\.....\...\......\RunDialog_HCL.java
...........\.......\.....\...\......\RunDialog_ISA.java
...........\.......\.....\...\......\RunDialog_KMeans.java
...........\.......\.....\...\......\RunDialog_OPSM.java
...........\.......\.....\...\......\RunDialog_XMotifs.java
...........\.......\.....\...\......\RunInfo.java
...........\.......\.....\...\......\SaveBicluster.java
...........\.......\.....\...\......\Search.java
...........\.......\.....\...\......\TabbedPaneController.java
...........\.......\.....\...\......\TablePreviewHandler.java
...........\.......\.....\pos
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