ghmm-0.9-rc1
............\aclocal.m4
............\Makefile.am
............\ToDo
............\acinclude.m4
............\tests
............\.....\Makefile.am
............\.....\randvar_test.c
............\.....\data
............\.....\....\Makefile.am
............\.....\....\Makefile.in
............\.....\....\test.smo
............\.....\....\test10.sqd
............\.....\....\test100.sqd
............\.....\....\viterbi.sh
............\.....\root_finder_test.c
............\.....\Makefile.in
............\.....\label_higher_order_test.c
............\.....\shmm_viterbi_test.c
............\.....\test_gsl_ran_gaussian_tail.c
............\.....\sequences_old_format.c
............\.....\two_states_three_symbols.c
............\.....\chmm_test.c
............\.....\coin_toss_test.c
............\.....\libxml-test.c
............\.....\read_fa.c
............\.....\chmm.c
............\.....\sequences_test.c
............\depcomp
............\NEWS
............\Makefile.in
............\autogen.sh
............\ltmain.sh
............\tools
............\.....\Makefile.am
............\.....\scluster.c
............\.....\Makefile.in
............\.....\ghmm-config.in
............\.....\smo2xml.c
............\.....\cluster.c
............\.....\smix_hmm.c
............\.....\probdist.c
............\doc
............\...\ghmm.dtd.1.0
............\...\xml_switching-example.xml
............\...\xml_cont_example.xml
............\...\xml_data_structure.fig
............\...\xml_mix_cont_example.xml
............\...\xml_example.xml
............\README
............\GPL.txt
............\install-sh
............\COPYRIGHT.txt
............\missing
............\INSTALL
............\configure
............\configure.in
............\config.guess
............\ghmmwrapper
............\...........\wrapper_arrays.i
............\...........\wrapper_xmlfile.i
............\...........\Makefile.am
............\...........\wrapper_cmodel.i
............\...........\mixture.py
............\...........\gql.c
............\...........\testdata
............\...........\........\d_seq.sqd
............\...........\........\tiny.smo
............\...........\........\test2.xml
............\...........\........\tk.hmm
............\...........\........\multexon-4.xml
............\...........\........\multiple_hmmer.hmm
............\...........\........\test10.sqd
............\...........\........\model_label.xml
............\...........\........\tiny.txt.sqd
............\...........\........\discrete.xml
............\...........\........\es_discrete_testwrite.seq
............\...........\........\xml_cont_multiple.xml
............\...........\Makefile.in
............\...........\class_change.py
............\...........\sclass_change.h
............\...........\ghmm_gato
............\...........\.........\xmlutil.py
............\...........\.........\Graph.py
............\...........\.........\__init__.py
............\...........\.........\GatoGlobals.py
............\...........\.........\EditObjectAttributesDialog.py
............\...........\.........\DataStructures.py
............\...........\.........\GraphUtil.py
............\...........\.........\HMMEd.py
............\...........\wrapper_dpmodel.i
............\...........\sclass_change.c
............\...........\wrapper_dseq.i
............\...........\wrapper_dmodel.i
............\...........\pclasschange.c
............\...........\wrapper_cseq.i
............\...........\modhmmer.py
............\...........\pclasschange.h
............\...........\INSTALL
............\...........\sdclass_change.h