File list (Check if you may need any files):
Graph
.....\DynamicProcess
.....\..............\DynamicProcessInitialize.m
.....\..............\DynamicProcessInitializeSI.m
.....\..............\DynamicProcessInitializeSIR.m
.....\..............\DynamicProcessInitializeSIS.m
.....\..............\DynamicProcessIterate.m
.....\..............\private
.....\..............\.......\DynamicProcessConvertGraph.m
.....\..............\.......\GetDefaultInputInitialize.m
.....\FlexIO
.....\......\FIOAddParameter.m
.....\......\FIOParameterNames.m
.....\......\FIOProcessInputParameters.m
.....\......\FIOTestInput.m
.....\......\vssver.scc
.....\GraphBetweennessDegreeHierarchy.m
.....\GraphComponents.m
.....\GraphComponentsDirected.m
.....\GraphConvertToLineGraph.m
.....\GraphCountNodeDegree.m
.....\GraphCountNodesDegree.m
.....\GraphCountNumberOfLinks.m
.....\GraphCountNumberOfNodes.m
.....\GraphCountStatistics.m
.....\GraphCountUnderectionality.m
.....\GraphCreateRandomGraph.m
.....\GraphDrawGraphViz.m
.....\GraphDrawPajek.m
.....\GraphExportToFile.m
.....\GraphExportToGML.m
.....\GraphExportToPajek.m
.....\GraphFindCrossLinks.m
.....\GraphGenerateCompleteBipartiteGraph.m
.....\GraphGenerateCompleteGraph.m
.....\GraphGenerateCompleteKPartiteGraph.m
.....\GraphGenerateSquareLattice.m
.....\GraphGetNodeNames.m
.....\GraphGetNodeProperty.m
.....\GraphGIUBrowseGraph.m
.....\GraphGIUBrowseGraph.mat
.....\GraphGIUSelectGraph.m
.....\GraphKShell.m
.....\GraphLinkAdd.m
.....\GraphLinkFind.m
.....\GraphLinkRemove.m
.....\GraphLoad.m
.....\GraphLoadAdjacencyMatrixFromFile.m
.....\GraphLoadFromFile.m
.....\GraphMakeUndirected.m
.....\GraphNodeAdd.m
.....\GraphNodeDistancesDistribution.m
.....\GraphNodeFirstNeighbours.m
.....\GraphNodeIDs.m
.....\GraphNodeRemove.m
.....\GraphPlotNodesDegreeDistribution.m
.....\GraphPlotNodesDegreeDistributionNature.m
.....\GraphRemoveDuplicateLinks.m
.....\GraphRemoveUnlinkedNodes.m
.....\GraphReverseLinks.m
.....\GraphSaveAsDirectedListToFile.m
.....\GraphSaveToFile.m
.....\GraphSetNodeProperty.m
.....\mexBetweenesCentrality.m
.....\mexCirclesOfDegree.m
.....\mexGraphAverageNearestNeighborDegree.m
.....\mexGraphBetweennessCentrality.m
.....\mexGraphBoxCounting.m
.....\mexGraphClusteringCoefficient.m
.....\mexGraphConnectedComponents.m
.....\mexGraphCountCircles.m
.....\mexGraphCountEmbeddedTies.m
.....\mexGraphCreateRandomGraph.m
.....\mexGraphFlowHierarchy.m
.....\mexGraphGeneratePoissonRandomGraph.m
.....\mexGraphHITS.m
.....\mexGraphKCore.m
.....\mexGraphMergeNodes.m
.....\mexGraphNeighboursOverlap.m
.....\mexGraphNodeConnectivity.m
.....\mexGraphNodeConnectivityFunnel.m
.....\mexGraphNodeCountShortestPasses.m
.....\mexGraphNodeRemove.m
.....\mexGraphPageRank.m
.....\mexGraphSqueeze.m
.....\mexNodeNeighbours.m
.....\mexNodeSurroundings.m
.....\ObjectAddSignature.m
.....\ObjectCreate.m
.....\ObjectCreateGraph.m
.....\ObjectGetType.m
.....\ObjectIsType.m
.....\mexBetweenesCentrality.mexw32
.....\mexCirclesOfDegree.mexw32
.....\mexCreateGUID.mexw32
.....\mexGraphAllNodeNeighbours.mexw32
.....\mexGraphAverageNearestNeighborDegree.mexw32
.....\mexGraphBetweennessCentrality.mexw32
.....\mexGraphBoxCounting.mexw32
.....\mexGraphClusteringCoefficient.mexw32