Description: Application that extracts features from segments, retrieved from microscope cell images. Each segment represents one cell. Feature vector consists of following features:
- cell s area
- cell s centroid
- cell s weighted centroid
- cell s convex hull
- cell s maximal density
- cell s minimal density
- cell s density standard deviation
- minimal outwritten elipse
- cell circuit
For each segment found at the microscope image, new feature vector is computed. All of them are then transferred to the output.
That extrator could be used as a plugin to the KNIME Enironment. It is represented by separated node which has to be connected with ImageReader.
To Search:
File list (Check if you may need any files):
FeatureExtractionNode\.classpath
.....................\.project
.....................\bin\org\r3s\knime\feature\default.png
.....................\...\...\...\.....\.......\extractor\FeatureExtractor.class
.....................\...\...\...\.....\.......\.........\FeatureVector.class
.....................\...\...\...\.....\.......\.........\SegmentCounter.class
.....................\...\...\...\.....\.......\FeatureExtractionNodeDialog.class
.....................\...\...\...\.....\.......\FeatureExtractionNodeFactory.class
.....................\...\...\...\.....\.......\FeatureExtractionNodeFactory.xml
.....................\...\...\...\.....\.......\FeatureExtractionNodeModel.class
.....................\...\...\...\.....\.......\FeatureExtractionNodePlugin.class
.....................\...\...\...\.....\.......\FeatureExtractionNodeView.class
.....................\...\...\...\.....\.......\features\AbstractFeature.class
.....................\...\...\...\.....\.......\........\AreaFeature.class
.....................\...\...\...\.....\.......\........\ConvexHull$Quicksort.class
.....................\...\...\...\.....\.......\........\ConvexHull.class
.....................\...\...\...\.....\.......\........\IntensityStandardDeviation.class
.....................\...\...\...\.....\.......\........\MaximalIntensityValue.class
.....................\...\...\...\.....\.......\........\MaximalInwrittenElipse.class
.....................\...\...\...\.....\.......\........\MinimalIntensityValue.class
.....................\...\...\...\.....\.......\........\MinimalOutwrittenElipse.class
.....................\...\...\...\.....\.......\........\SegmentCentroid.class
.....................\...\...\...\.....\.......\........\SegmentCircuit.class
.....................\...\...\...\.....\.......\........\WeightedSegmentCentroid.class
.....................\...\...\...\.....\.......\io\FileSaver.class
.....................\...\...\...\.....\.......\..\ImageReader$1.class
.....................\...\...\...\.....\.......\..\ImageReader$2.class
.....................\...\...\...\.....\.......\..\ImageReader.class
.....................\...\...\...\.....\.......\..\InputChannelMatrix.class
.....................\...\...\...\.....\.......\..\Output.class
.....................\...\...\...\.....\.......\..\RGBStackSplitter.class
.....................\...\...\...\.....\.......\..\Test.class
.....................\...\...\...\.....\.......\main\Main.class
.....................\...\...\...\.....\.......\package.html
.....................\build.properties
.....................\lib\ij.jar
.....................\META-INF\MANIFEST.MF
.....................\plugin.xml
.....................\src\org\r3s\knime\feature\default.png
.....................\...\...\...\.....\.......\extractor\.svn\all-wcprops
.....................\...\...\...\.....\.......\.........\....\entries
.....................\...\...\...\.....\.......\.........\....\text-base\FeatureExtractor.java.svn-base
.....................\...\...\...\.....\.......\.........\....\.........\FeatureVector.java.svn-base
.....................\...\...\...\.....\.......\.........\....\.........\SegmentCounter.java.svn-base
.....................\...\...\...\.....\.......\.........\FeatureExtractor.java
.....................\...\...\...\.....\.......\.........\FeatureVector.java
.....................\...\...\...\.....\.......\.........\SegmentCounter.java
.....................\...\...\...\.....\.......\FeatureExtractionNodeDialog.java
.....................\...\...\...\.....\.......\FeatureExtractionNodeFactory.java
.....................\...\...\...\.....\.......\FeatureExtractionNodeFactory.xml
.....................\...\...\...\.....\.......\FeatureExtractionNodeModel.java
.....................\...\...\...\.....\.......\FeatureExtractionNodePlugin.java
.....................\...\...\...\.....\.......\FeatureExtractionNodeView.java
.....................\...\...\...\.....\.......\features\.svn\all-wcprops
.....................\...\...\...\.....\.......\........\....\entries
.....................\...\...\...\.....\.......\.....
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