File list (Check if you may need any files):
ATmega2560
..........\AVRStudio
..........\.........\bootloader_cof.aps
..........\.........\bootloader_cof.aws
..........\Exe
..........\...\bootloader.hex
..........\...\bootloader.rom
..........\Linker
..........\......\flash.a
..........\......\flash.o
..........\......\main.a
..........\......\main.o
..........\......\serial.a
..........\......\serial.o
..........\List
..........\....\bootloader.asm
..........\....\bootloader.lst
..........\Obj
..........\...\bootloader.cof
..........\...\bootloader.obj
..........\...\flash.str1
..........\...\flash.sym1
..........\...\flash.sym2
..........\...\flash.sym3
..........\...\main.str1
..........\...\main.sym1
..........\...\main.sym2
..........\...\main.sym3
..........\...\serial.str1
..........\...\serial.sym1
..........\...\serial.sym2
..........\...\serial.sym3
..........\bootloader.cof
..........\bootloader.fct
..........\bootloader.map
..........\bootloader.prj
..........\bootloader.prj~
..........\bootloader.txt
..........\defines.h
..........\defines.hci
..........\flash.c
..........\flash.cci
..........\flash.h
..........\flash.hci
..........\main.c
..........\main.cci
..........\main.c~
..........\serial.c
..........\serial.cci
..........\serial.h
..........\serial.hci