File list (Check if you may need any files):
extras\binLinkageData.m
......\checkSubArrayPosition.m
......\chromosomeGUI.fig
......\chromosomeGUI.m
......\correlateQtoAProfiles.m
......\createPermutedSets.m
......\DispHeatMapsLegend.tif
......\DisplayHeatmaps.fig
......\DisplayHeatmaps.m
......\extractLinkagePlotsA.m
......\extractLinkagePlotsQ.m
......\findString.m
......\getDistancesA.m
......\getDistancesQ.m
......\linkageGUI.fig
......\linkageGUI.m
......\linkageSDscatter.m
......\makeLinkageMap.m
......\makeSquare.m
......\mergeScoreMatHorz.m
......\mergeScoreMatVert.m
......\permuteArrayMap.m
......\plotALinkageProfile.m
......\plotQLinkageProfile.m
......\removeColsByIndex.m
......\removeRowsByIndex.m
......\reorderAbyCoordinate.m
......\reorderCoords.m
......\reorderQbyCoordinate.m
......\scatterQACorrelations.m
......\surfGUI.fig
......\surfGUI.m
......\to_plate.m
get\data2plate.asv
...\data2plate.m
...\getGeneName.asv
...\getGeneName.m
...\getGeneNum.m
...\getGeneNums.m
...\getInteraction.asv
...\getInteraction.m
...\getOrfName.m
...\getOrfNameOld.m
...\getOrfNum.asv
...\getOrfNum.m
...\index2col.m
...\index2row.m
...\path2filename.m
...\plate2data.asv
...\plate2data.m
math\dfdp.m
....\dfdp2.m
....\div.m
....\function equations
....\..................\gaussian.m
....\..................\gaussianStand.m
....\..................\myTpdf.m
....\..................\splineFitFunc.m
....\..................\tdistForFitting.m
....\..................\tpdfInt.m
....\leasqr.m
....\leasqr2.m
....\linearInterp.m
....\middleMean.m
....\mod.m
....\myNanCorrcoef.asv
....\myNanCorrcoef.m
....\myNanCosine.m
....\myNanMean.asv
....\myNanMean.m
....\myNanMedian.m
....\myNanSD.asv
....\myNanSD.m
....\myNanSpearman.m
....\myNanVar.asv
....\myNanVar.m
....\nan25percentile.m
....\nan75percentile.m
....\nanMiddleMean.m
....\pav.m
....\sigmoid.m
....\smooth.m
....\splinefit.m
plot\computeRowScatterUsingNames.asv
....\computeRowScatterUsingNames.m
....\dscatter.asv
....\dscatter.m
....\imageMeanSizes.m
....\imagescnan.m
....\imagescnan_license.txt
....\imageScores.m
....\plotConfidenceCurve.m
....\plotEstimatedPartnerScores.m
....\plotScoresByChromCoord.asv
....\plotScoresByChromCoord.m
....\scatterAllReplicates.asv
....\scatterAllReplicates.m
....\scatterBiologicalReplicates.asv
....\scatterBiologicalReplicates.m
....\scatterDataWithNames.asv