File list (Check if you may need any files):
plugin\AboutBox.java
......\Animator.java
......\AVI_Reader.java
......\BMP_Reader.java
......\BMP_Writer.java
......\BrowserLauncher.java
......\CanvasResizer.java
......\ClassChecker.java
......\Clipboard.java
......\ColorPicker.java
......\Colors.java
......\CommandFinder.java
......\CommandLister.java
......\Commands.java
......\Compiler.java
......\CompositeConverter.java
......\ContrastEnhancer.java
......\ControlPanel.java
......\Converter.java
......\DICOM.java
......\DICOM_Sorter.java
......\Distribution.java
......\DragAndDrop.java
......\FFT.java
......\FFTMath.java
......\FileInfoVirtualStack.java
......\FITS_Reader.java
......\FITS_Writer.java
......\FolderOpener.java
......\GelAnalyzer.java
......\GifWriter.java
......\Histogram.java
......\Hotkeys.java
......\HyperStackConverter.java
......\HyperStackReducer.java
......\ImageCalculator.java
......\ImageJ_Updater.java
......\Installer.java
......\JavaProperties.java
......\JpegWriter.java
......\ListVirtualStack.java
......\LutLoader.java
......\LUT_Editor.java
......\MacroInstaller.java
......\Macro_Runner.java
......\MeasurementsWriter.java
......\Memory.java
......\MemoryMonitor.java
......\MontageMaker.java
......\NewPlugin.java
......\NextImageOpener.java
......\Options.java
......\PGM_Reader.java
......\PlugIn.java
......\PNG_Writer.java
......\PNM_Writer.java
......\ProxySettings.java
......\Raw.java
......\RGBStackConverter.java
......\RGBStackMerge.java
......\RoiReader.java
......\ScaleBar.java
......\Scaler.java
......\ScreenGrabber.java
......\Selection.java
......\SimpleCommands.java
......\Slicer.java
......\SpecifyROI.java
......\StackEditor.java
......\StackWriter.java
......\SurfacePlotter.java
......\TextFileReader.java
......\TextReader.java
......\TextWriter.java
......\ThreadLister.java
......\Thresholder.java
......\Timer.java
......\URLOpener.java
......\WindowOrganizer.java
......\XYCoordinates.java
......\Zoom.java
......\ZProjector.java
......\frame\Channels.java
......\.....\ContrastAdjuster.java
......\.....\Editor.java
......\.....\Fitter.java
......\.....\Fonts.java
......\.....\LineWidthAdjuster.java
......\.....\PasteController.java
......\.....\PlugInFrame.java
......\.....\Recorder.java
......\.....\RoiManager.java
......\.....\ThresholdAdjuster.java
......\.ilter\Analyzer.java
......\......\AVI_Writer.java
......\......\BackgroundSubtracter.java
......\......\Benchmark.java
......\......\Binary.java
......\......\CalibrationBar.java
......\......\Calibrator.java