kraken-master
.............\CHANGELOG
.............\LICENSE
.............\README.md
.............\docs
.............\....\MANUAL.html
.............\....\MANUAL.markdown
.............\....\Makefile
.............\....\bar-bg.png
.............\....\head.html
.............\....\kraken.css
.............\....\top.html
.............\install_kraken.sh
.............\scripts
.............\.......\add_to_library.sh
.............\.......\build_kraken_db.sh
.............\.......\check_for_jellyfish.sh
.............\.......\clean_db.sh
.............\.......\cp_into_tempfile.pl
.............\.......\download_genomic_library.sh
.............\.......\download_taxonomy.sh
.............\.......\kraken
.............\.......\kraken-build
.............\.......\kraken-filter
.............\.......\kraken-mpa-report
.............\.......\kraken-report
.............\.......\kraken-translate
.............\.......\krakenlib.pm
.............\.......\read_merger.pl
.............\.......\report_gi_numbers.pl
.............\.......\shrink_db.sh
.............\.......\standard_installation.sh
.............\.......\upgrade_db.sh
.............\.......\verify_gi_numbers.pl
.............\src
.............\...\Makefile
.............\...\classify.cpp
.............\...\db_shrink.cpp
.............\...\db_sort.cpp
.............\...\kraken_headers.hpp
.............\...\krakendb.cpp
.............\...\krakendb.hpp
.............\...\krakenutil.cpp
.............\...\krakenutil.hpp
.............\...\make_seqid_to_taxid_map.cpp
.............\...\quickfile.cpp
.............\...\quickfile.hpp
.............\...\seqreader.cpp
.............\...\seqreader.hpp
.............\...\set_lcas.cpp