Description: DeepBind can analyze noisy experimental data to determine a set of DNA and RNA sequences to which the protein will bind. Then it can look at a new sequence, calculating how likely it is that these proteins are bound to it. Given a sequence mutation, the tool can analyze whether a binding change is made. Protein-binding site mutations, additions or deletions can alter gene expression patterns and cause disease.
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File list (Check if you may need any files):
code\Backup\deepbind_scripts.sln
....\......\deepbind_scripts.v11.suo
....\cfg\classification\M1.cfg
....\...\..............\M2.cfg
....\...\regression\allpool\M1.cfg
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....\...\..........\maxpool\M1.cfg
....\...\..........\.......\M2.cfg
....\...\trainers\default.cfg
....\...\........\quick.cfg
....\deepbind_scripts.pyproj
....\deepbind_scripts.sln
....\deepbind_scripts.v11.suo
....\deepbind_train_dream5.py
....\deepbind_train_encode.py
....\deepbind_train_rnac.py
....\deepbind_train_selex.py
....\deepbind_util.py
....\deepbind_util.pyc
....\deepfind.py
....\libs\deepity\build\release\bin\libdeepity_smat.so
....\....\.......\.....\.......\obj\DEEPITY_SMAT\blockwise_dot.d
....\....\.......\.....\.......\...\............\blockwise_dot.o
....\....\.......\.....\.......\...\............\deepity_smat.d
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....\....\.......\deepity\arial.ttf
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....\....\.......\.......\data.py
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....\....\.......\.......\dumpviz.py
....\....\.......\.......\globals.py
....\....\.......\.......\globals.pyc
....\....\.......\.......\gradcheck.py
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....\....\.......\.......\hpsearch.py
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....\....\.......\.......\hypertrain.py
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....\....\.......\.......\node.py
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....\....\.......\.......\plug.py
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....\....\.......\.......\report.py
....\....\.......\.......\report.pyc
....\....\.......\.......\report_plotter.py
....\....\.......\.......\sgd.py
....\....\.......\.......\sgd.pyc
....\....\.......\.......\.td\chain.py
....\....\.......\.......\...\chain.pyc
....\....\.......\.......\...\elemwise.py
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....\....\.......\.......\...\full.py
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....\....\.......\.......\...\loss.py
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....\....\.......\.......\...\trainable.py
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....\....\.......\.......\tape2logo.py
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....\....\.......\.......\trainer.py
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....\....\.......\.......\util.py
....\....\.......\.......\util.pyc
....\....\.......\.......\_ext\deepity_smat.py
....\....\.......\.......\....\deepity_smat.pyc
....\....\.......\.......\....\__init__.py
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....\....\.......\.......\.io_\load.py
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....\....\.......\.......\....\pydot.py
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....\....\.......\.......\....\write_svg.py
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....\....\.......\.......\.lockfile\linklockfile.py
....\....\.......\.......\.........\mkdirlockfile.py
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....\....\.......\.......\.........\sqlitelockfile.py
....\....\.......\.......\.........\__init__.py
....\....\.......\.......\__init__.py
....\....\.......\.......\__init__.pyc
....\....\.......\......._smat\blockwise_dot.cu
....\....\.......\............\deepity_smat.cpp
....\....\.......\............\dropout.cu
....\....\.......\............\gradstep.cu
....\....\.......\........
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