File list (Check if you may need any files):
mindy
.....\README
.....\src
.....\...\.nfs48B4
.....\...\ComputeBonded.C
.....\...\ComputeBonded.h
.....\...\ComputeNonbonded.C
.....\...\ComputeNonbonded.h
.....\...\Hydrogen.h
.....\...\Integrator.C
.....\...\Lattice.h
.....\...\LJTable.C
.....\...\LJTable.h
.....\...\Makefile
.....\...\Mindy.h
.....\...\Molecule.C
.....\...\Molecule.h
.....\...\Parameters.C
.....\...\Parameters.h
.....\...\PDB.C
.....\...\PDB.h
.....\...\PDBData.C
.....\...\PDBData.h
.....\...\strlib.C
.....\...\strlib.h
.....\...\UniqueSet.h
.....\...\UniqueSetIter.h
.....\...\UniqueSetRaw.h
.....\...\Vector.h
.....\test
.....\....\alanin.params
.....\....\alanin.pdb
.....\....\alanin.psf
.....\....\brH.params
.....\....\brH.pdb
.....\....\brH.psf