This the implementation of structural SVM for training complex alignment models for protein sequence alignment, especially for homology modeling. The structural SVM algorithm can incorporate many relevant features like secondary structure, relative exposed surface area, profiles and their various interaction into the alignment model. It was developed under Linux and compiles under gcc, built upon the svm^light software by Thorsten Joachims.

Packet : 85375554svm_alignment_0.7.rar filelist
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svm_alignment_0.7\svm_alignment_0.7\WINDOW.c
svm_alignment_0.7\svm_alignment_0.7
svm_alignment_0.7

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