File list (Check if you may need any files):
activationFunction
..................\ActivationFunctionModel.java
..................\HardLimitActivationFunction.java
..................\LinearActivationFunction.java
..................\SymetricHardLimitActivationFunction.java
..................\TransparentActivationFunction.java
kohonen
.......\LearningData.java
.......\LearningDataModel.java
.......\WTALearningFunction.java
.......\WTALearningFunctionWithTired.java
.......\WTMLearningFunction.java
.......\WTMLearningFunctionWithTired.java
learningFactorFunctional
........................\ConstantFunctionalFactor.java
........................\ExponentionalFunctionFactor.java
........................\GaussFunctionalFactor.java
........................\HiperbolicFunctionalFactor.java
........................\LearningFactorFunctionalModel.java
........................\LinearFunctionalFactor.java
META-INF
metrics
.......\CityBlockMetric.java
.......\EuclidesMetric.java
.......\MetricModel.java
.......\MinkowskiMetric.java
network
.......\DefaultNetwork.java
.......\DefaultNeuron.java
.......\DefaultNeuronWithBias.java
.......\KohonenNeuron.java
.......\KohonenNeuronWithTired.java
.......\NetworkModel.java
.......\NeuronModel.java
.......\TiredNeuronModel.java
topology
........\Coords.java
........\GaussNeighbourhoodFunction.java
........\HexagonalTopology.java
........\MatrixTopology.java
........\NeighbourhoodFunctionModel.java
........\TopologyModel.java