lastz_src
.........\.DS_Store
.........\bin
.........\images





.........\......\aglobin_closeup_seeds.png
.........\......\aglobin_hsps.png
.........\......\aglobin_unchained.png
.........\......\anchors_and_alignment.png
.........\......\before_chaining.png
.........\......\before_interpolation.png
.........\......\human_vs_chicken.png
.........\......\human_vs_chicken_full.png
.........\......\seeds_and_hsps.png
.........\......\seq_vs_same.png
.........\......\seq_vs_same_notrivial.png
.........\......\seq_vs_self.png
.........\......\seq_vs_self_no_mirror.png
.........\......\ydrop.png
.........\make-include.mak
.........\Makefile
.........\README.lastz.html
.........\src
.........\...\.DS_Store
.........\...\align_diffs.c
.........\...\align_diffs.h
.........\...\align_diffs.o
.........\...\align_diffs_D.o
.........\...\axt.c
.........\...\axt.h
.........\...\axt.o
.........\...\axt_D.o
.........\...\capsule.c
.........\...\capsule.h
.........\...\capsule.o
.........\...\capsule_D.o
.........\...\chain.c
.........\...\chain.h
.........\...\chain.o
.........\...\chain_D.o
.........\...\cigar.c
.........\...\cigar.h
.........\...\cigar.o
.........\...\cigar_D.o
.........\...\coverage_dist.c
.........\...\coverage_dist.h
.........\...\coverage_dist.o
.........\...\coverage_dist_D.o
.........\...\diag_hash.c
.........\...\diag_hash.h
.........\...\diag_hash.o
.........\...\diag_hash_D.o
.........\...\dna_utilities.c
.........\...\dna_utilities.h
.........\...\dna_utilities.o
.........\...\dna_utilities_D.o
.........\...\edit_script.c
.........\...\edit_script.h
.........\...\edit_script.o
.........\...\edit_script_D.o
.........\...\gapped_extend.c
.........\...\gapped_extend.h
.........\...\gapped_extend.o
.........\...\gapped_extend_D.o
.........\...\genpaf.c
.........\...\genpaf.h
.........\...\genpaf.o
.........\...\genpaf_D.o
.........\...\gfa.c
.........\...\gfa.h
.........\...\gfa.o
.........\...\gfa_D.o
.........\...\identity_dist.c
.........\...\identity_dist.h
.........\...\identity_dist.o
.........\...\identity_dist_D.o
.........\...\infer_scores.c
.........\...\infer_scores.h
.........\...\infer_scores.o
.........\...\infer_scores_D.o
.........\...\lastz
.........\...\lastz.c
.........\...\lastz.h
.........\...\lastz.o
.........\...\lastz_D
.........\...\lastz_D.o
.........\...\lav.c
.........\...\lav.h
.........\...\lav.o
.........\...\lav_D.o
.........\...\maf.c
.........\...\maf.h
.........\...\maf.o
.........\...\maf_D.o
.........\...\Makefile
.........\...\masking.c