File list (Check if you may need any files):
META-INF
........\MANIFEST.MF
edu
...\uci
...\...\ics
...\...\...\jung
...\...\...\....\algorithms
...\...\...\....\..........\blockmodel
...\...\...\....\..........\cluster
...\...\...\....\..........\connectivity
...\...\...\....\..........\flows
...\...\...\....\..........\importance
...\...\...\....\..........\metrics
...\...\...\....\..........\shortestpath
...\...\...\....\..........\transformation
...\...\...\....\exceptions
...\...\...\....\graph
...\...\...\....\.....\decorators
...\...\...\....\.....\event
...\...\...\....\.....\filters
...\...\...\....\.....\.......\impl
...\...\...\....\.....\impl
...\...\...\....\.....\predicates
...\...\...\....\io
...\...\...\....\random
...\...\...\....\......\generators
...\...\...\....\......\permuters
...\...\...\....\statistics
...\...\...\....\utils
...\...\...\....\visualization
...\...\...\....\.............\contrib
...\...\...\....\.............\control
...\...\...\....\.............\graphdraw
...\...\...\....\.............\subLayout
...\...\...\....\.............\transform
...\...\...\....\.............\.........\shape
samples
.......\graph
.......\.....\southern
.......\preview_new_graphdraw
.......\.....................\event
.......\.....................\impl
.......\.....................\....\crooked
.......\.....................\iter
.......\.....................\iterablelayouts
.......\.....................\staticlayouts
.......\.....................\test
.......\.....................\transform
edu\uci\ics\jung\algorithms\GraphMatrixOperations.class
...\...\...\....\..........\IterativeProcess.class
...\...\...\....\..........\MatrixElementOperations.class
...\...\...\....\..........\RealMatrixElementOperations.class
...\...\...\....\..........\blockmodel\BipartiteGraphCollapser$CollapsedBipartiteEdge.class
...\...\...\....\..........\..........\BipartiteGraphCollapser$CollapsedBipartiteVertex.class
...\...\...\....\..........\..........\BipartiteGraphCollapser.class
...\...\...\....\..........\..........\EquivalenceAlgorithm.class
...\...\...\....\..........\..........\EquivalenceRelation.class
...\...\...\....\..........\..........\GraphCollapser$CollapsedEdge.class
...\...\...\....\..........\..........\GraphCollapser$CollapsedSparseVertex.class
...\...\...\....\..........\..........\GraphCollapser$CollapsedVertex.class
...\...\...\....\..........\..........\GraphCollapser$DirectedCollapsedEdge.class
...\...\...\....\..........\..........\GraphCollapser$UndirectedCollapsedEdge.class
...\...\...\....\..........\..........\GraphCollapser.class
...\...\...\....\..........\..........\StructurallyEquivalent.class
...\...\...\....\..........\..........\StructurallyEquivalentII.class
...\...\...\....\..........\cluster\BicomponentClusterer.class
...\...\...\....\..........\.......\ClusterSet$1.class
...\...\...\....\..........\.......\ClusterSet.class
...\...\...\....\..........\.......\EdgeBetweennessClusterer.class
...\...\...\....\..........\.......\EdgeClusterSet.class
...\...\...\....\..........\.......\ExactFlowCommunity.class
...\...\...\....\..........\.......\GraphClusterer.class
...\...\...\....\..........\.......\KMeansClusterer$NotEnoughClustersException.class
...\...\...\....\..........\.......\KMeansClusterer.class
...\...\...\....\..........\.......\VertexClusterSet.class
...\...\...\....\..........\.......\VoltageClusterer$1.class
...\...\...\....\..........\.......\VoltageClusterer.class
...\...\...\....\..........\.......\WeakComponentClusterer.class
...\...\...\....\..........\.onnectivity\BFSDistanceLabeler.class
...\...\...\....\..........\............\KNeighborhoodExtractor.class
...\...\...\....\..........\flows\EdmondsKarpMaxFlow.class
...\...\...\....\..........\importance\AbstractRanker.class
...\...\...\....\..........\..........\BaryCenter.class
...\...\...\....\..........\..........\BetweennessCentrality$BetweennessData.class
...\...\...\....\..........\..........\BetweennessCentrality$BetweennessDataDecorator.class
...\...\...\....\..........\..........\BetweennessCentrality.class
...\...\...\....\..........\..........\DegreeDistri