Description: UGENE is a free cross-platform genome analysis suite.
Main features:
Multiple sequence alignment using MUSCLE 3,4 and KAlign
HMM profiles build and search, based on the source of HMMER 2 and HMMER 3
PCR Primers design using Primer 3
Protein secondary structure prediction using GOR IV and PSIPRED
Phylogenetic analysis with Phylip
Search for restriction enzymes and integration with REBASE
Extremely fast repeat finder
DNA reference assembly using Bowtie
Search for transcription factor binding sites using SITECON
Protein back translation
ORF finder
Complete Smith-Waterman algorithm implementation
Comparing genomes using dotplot view.
- [profile_HMM] - One for protein sequence classification
- [Protein] - Used in bioinformatics using java 3D vis
File list (Check if you may need any files):
ugene_1_7_0_win_x86.exe
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