Description: libsequence is a C++ library designed to aid writing applications for genomics and evolutionary genetics. The library is intended to be viewed as a "BioC++" akin to the bioperl project, although the scope of libsequence is limited in comparison. the focus is on biological computation, such as the analysis of SNP data and sequence divergence, and the analysis of data generated from coalescent simulation.
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File list (Check if you may need any files):
libsequence-1.7.4
.................\acinclude.m4
.................\aclocal.m4
.................\AUTHORS
.................\ChangeLog
.................\config.guess
.................\config.h.in
.................\config.sub
.................\configure
.................\configure.in
.................\COPYING
.................\debian
.................\......\changelog
.................\......\changelog~
.................\......\control
.................\......\copyright
.................\......\crontab.ex
.................\......\dirs
.................\......\diversions.ex
.................\......\inetd.conf.ex
.................\......\info.ex
.................\......\init.d.ex
.................\......\libsequence1.files
.................\......\manpage.1.ex
.................\......\menu.ex
.................\......\README.debian
.................\......\rules
.................\......\watch.ex
.................\depcomp
.................\doc
.................\...\images
.................\...\......\2subs
.................\...\......\2subs.jpg
.................\...\......\2subs.pdf
.................\...\......\3subs
.................\...\......\3subs.jpg
.................\...\......\3subs.pdf
.................\...\......\temp
.................\...\libsequence.doxygen
.................\...\Makefile
.................\examples
.................\........\baseComp.cc
.................\........\bottleneck.cc
.................\........\codons.cc
.................\........\correlations.cc
.................\........\critical_values.cc
.................\........\FastaExplicit.cc
.................\........\fragments.cc
.................\........\freerec.cc
.................\........\gestimator.cc
.................\........\getopt.c
.................\........\getopt.h
.................\........\getopt1.c
.................\........\int_handler.cc
.................\........\int_handler.hpp
.................\........\Makefile
.................\........\ms--.cc
.................\........\msbeta.cc
.................\........\msstats.cc
.................\........\PolyTableIterators.cc
.................\........\slidingWindow.cc
.................\........\slidingWindow2.cc
.................\........\translateTest.cc
.................\........\ufs.cc
.................\........\valid_dna.cc
.................\INSTALL
.................\install-sh
.................\libsequence2.lsm.in
.................\libsequence2.spec.in
.................\ltmain.sh
.................\m4
.................\..\libtool.m4
.................\..\ltoptions.m4
.................\..\ltsugar.m4
.................\..\ltversion.m4
.................\..\lt~obsolete.m4
.................\Makefile.am
.................\Makefile.in
.................\missing
.................\mkinstalldirs
.................\NEWS
.................\README
.................\Sequence
.................\........\Alignment.hpp
.................\........\AlignStream.hpp
.................\........\bits
.................\........\....\Alignment.tcc
.................\........\....\AlignStream.tcc
.................\........\....\Clustalw.tcc
.................\........\....\Correlations.tcc
.................\........\....\CountingOperators.tcc
.................\........\....\descriptiveStats.tcc
.................\........\....\Makefile.am
.................\........\....\Makefile.in
.................\........\....\phylipData.tcc
.................\........\....\PolySites.tcc
.................\........\....\PolyTable.tcc
.................\........\....\PolyTableSlice.tcc
.................\........\....\Snn.tcc
.................\........\Clustalw.hpp
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