ged-master
ged-master\.gitignore
ged-master\README.txt
ged-master\alignImages.m
ged-master\analyse3d.m
ged-master\annotate3d.m
ged-master\annotations.mat
ged-master\atomicLogUpdate.m
ged-master\biasCorrect.m
ged-master\biasCorrect3d.m
ged-master\biasCorrectNSegment3d.m
ged-master\boneAnalysis.m
ged-master\boneFraction.m
ged-master\boneFraction2.m
ged-master\boneFraction3.m
ged-master\boneFraction3_halfsize.m
ged-master\boneFraction3d.m
ged-master\boneFractionFunction.m
ged-master\boneFractionInnerFunction.m
ged-master\cdf2pdf.m
ged-master\circ.mat
ged-master\circularRegionOfInterst3d.m
ged-master\convertUnit.m
ged-master\darkMask.tiff
ged-master\desiredHistogram.mat
ged-master\edgeEffect3d.m
ged-master\energyImage.m
ged-master\entropyCost.m
ged-master\equalizeImage.m
ged-master\experimentationScripts
ged-master\experimentationScripts\analyzeSmallDataTryout.m
ged-master\experimentationScripts\annotationCell2Struct.m
ged-master\experimentationScripts\biasCorrect.m
ged-master\experimentationScripts\biasCorrectPlay.m
ged-master\experimentationScripts\createOverlayImages.m
ged-master\experimentationScripts\darkMask.tiff
ged-master\experimentationScripts\dist_hist2_pag_runner.m
ged-master\experimentationScripts\edgeDetection.m
ged-master\experimentationScripts\extractSlice.m
ged-master\experimentationScripts\extractSlicePlay.m
ged-master\experimentationScripts\firstImageInStack.m
ged-master\experimentationScripts\fminsearchPlay.m
ged-master\experimentationScripts\getMajorAxis.m
ged-master\experimentationScripts\getRotMat.m
ged-master\experimentationScripts\getSliceScript.m
ged-master\experimentationScripts\getSliceScript2.m
ged-master\experimentationScripts\getSliceTest.m
ged-master\experimentationScripts\imsc.m
ged-master\experimentationScripts\intensityProblem.m
ged-master\experimentationScripts\interpn4DExample.m
ged-master\experimentationScripts\interpnPlay.m
ged-master\experimentationScripts\jonMoede.m
ged-master\experimentationScripts\lightMask.tiff
ged-master\experimentationScripts\loadGed.m
ged-master\experimentationScripts\makeBiasImage.m
ged-master\experimentationScripts\makeCircle.m
ged-master\experimentationScripts\makeSmallDatasets.m
ged-master\experimentationScripts\normalizedConvExampleScript.m
ged-master\experimentationScripts\parsave.m
ged-master\experimentationScripts\plotShadingPlay.m
ged-master\experimentationScripts\resampleSegmentations.m
ged-master\experimentationScripts\resampleSmallData.m
ged-master\experimentationScripts\rotPlanePlay.m
ged-master\experimentationScripts\runMakeSmallDatasets.sh
ged-master\experimentationScripts\sample3d.m
ged-master\experimentationScripts\sample3dTest.m
ged-master\experimentationScripts\sampleGed.m
ged-master\experimentationScripts\saveBone.m
ged-master\experimentationScripts\saveBoneImplant.m
ged-master\experimentationScripts\saveDstMap.m
ged-master\experimentationScripts\saveImp.m
ged-master\experimentationScripts\segmentHistologyX10.m
ged-master\experimentationScripts\segmentImplantPlay.m
ged-master\experimentationScripts\segmentImplantPlay2.m
ged-master\experimentationScripts\sgnDstFromImg.m
ged-master\experimentationScripts\sgnDstMapFromSegmentations.m
ged-master\experimentationScripts\shadeArea.m
ged-master\experimentationScripts\slicePlay.m
ged-master\experimentationScripts\testEnergyImage.m
ged-master\experimentationScripts\testNormConv.m
ged-master\experimentationScripts\textureStats.m
ged-master\experimentationScripts\threadSideImage.m
ged-master\experimentationScripts\thresholdSegment.m
ged-master\experimentationScripts\thresholdSegmentCaller.m
ged-master\experimentationScripts\torstenKode.m
ged-master\experimentationScripts\visualizeSliceScript.m
ged-master\experimentationScripts\volDownsamplePlay.m
ged-master\extractSlice.m
ged-master\firstImageInStack
ged-master\firstImageInStack\5.05_ID1662_770_0001_mask.vol.png
ged-master\firstImageInStack\5.05_ID1662_771_0001_mask.vol.png
ged-master\firstImageInStack\5.05_ID1662_772_0001_mask.vol.png
ged-master\firstImageInStack\5.05_ID1662_773_0001_mask.vol.png
ged-master\firstImageInStack\5.05_ID1684_806_0001_mask.vol.png
ged-master\firstImageInStack\5.05_ID1684_809_0001_mask.vol.png
ged-master\firstImageInStack\5.05_ID1689_805_0001_mask.vol.png
ged-master\firstImageInStack\5.05_ID1689_808_0001_mask.vol.png
ged-master\forhold.txt
ged-master\fraction3d.m
ged-master\fractionPart.m