compile_c_files.m
functions\backwards2forwards.m
functions\backwards2forwards_2d_double.c
functions\backwards2forwards_2d_double.m
functions\backwards2forwards_3d_double.c
functions\backwards2forwards_3d_single.c
functions\fminlbfgs.m
functions\image_difference.m
functions\imgaussian.c
functions\imgaussian.m
functions\imresize3d.m
functions\inversegrid.m
functions\MakeDiffeomorphic.m
functions\make_grid_image.m
functions\make_init_grid.m
functions\maple_penalties_smoothing_2d.mw
functions\maple_penalties_smoothing_3d.mw
functions\maxNumCompThreads.c
functions\maxNumCompThreads.m
functions\mutual_histogram_double.c
functions\mutual_histogram_double.m
functions\mutual_histogram_single.c
functions\penalties_smoothness.m
functions\penalty_matrix.mat
functions\refine_grid.m
functions\showcs3.fig
functions\showcs3.m
functions\squared_difference_double.c
functions\squared_difference_double.m
functions\squared_difference_single.c
functions\strain.m
functions_affine\affine_error_3d_double.c
functions_affine\affine_error_3d_single.c
functions_affine\affine_parameter_scaling.m
functions_affine\affine_registration_error.m
functions_affine\affine_registration_image.m
functions_affine\affine_transform.m
functions_affine\affine_transform_2d_double.c
functions_affine\affine_transform_2d_double.m
functions_affine\affine_transform_3d_double.c
functions_affine\affine_transform_3d_single.c
functions_affine\image_interpolation.c
functions_affine\image_interpolation.h
functions_affine\make_transformation_matrix.m
functions_affine\multiple_os_thread.h
functions_nonrigid\bspline_coefficients.m
functions_nonrigid\bspline_error_2d_double.c
functions_nonrigid\bspline_error_3d_double.c
functions_nonrigid\bspline_error_3d_single.c
functions_nonrigid\bspline_grid_fitting.m
functions_nonrigid\bspline_registration_gradient.m
functions_nonrigid\bspline_registration_image.m
functions_nonrigid\bspline_transform.m
functions_nonrigid\bspline_transform_2d_double.c
functions_nonrigid\bspline_transform_2d_double.m
functions_nonrigid\bspline_transform_3d_double.c
functions_nonrigid\bspline_transform_3d_single.c
functions_nonrigid\bspline_trans_points_double.m
functions_nonrigid\image_interpolation.c
functions_nonrigid\image_interpolation.h
functions_nonrigid\image_interpolation.m
functions_nonrigid\jacobiandet_cost_gradient.m
functions_nonrigid\jacobiandet_error_2d_double.c
functions_nonrigid\jacobiandet_error_2d_double.m
functions_nonrigid\jacobiandet_error_3d_double.c
functions_nonrigid\jacobiandet_transform_2d_double.c
functions_nonrigid\jacobiandet_transform_2d_double.m
functions_nonrigid\jacobiandet_transform_3d_double.c
functions_nonrigid\movepixels.m
functions_nonrigid\movepixels_2d_double.c
functions_nonrigid\movepixels_2d_double.m
functions_nonrigid\movepixels_3d_double.c
functions_nonrigid\movepixels_3d_single.c
functions_nonrigid\multiple_os_thread.h
image_registration.m
images\brain1.png
images\brain2.png
images\brain3.png
images\landmarks.mat
images\landmarks1.png
images\landmarks2.png
images\lena.jpg
images\lenag1.png
images\lenag2.png
images\lenag3.png
images\lenag4.png
images\prostate1.png
images\prostate2.png
images\star1.png
images\star2.png
images\starpoints.mat
images\Thumbs.db
low_level_examples\addpaths.m
low_level_examples\example_2d_affine.m
low_level_examples\example_2d_nonrigid_1.m
low_level_examples\example_2d_nonrigid_2.m
low_level_examples\example_2d_nonrigid_3.m
low_level_examples\example_3d_affine.m
low_level_examples\example_3d_nonrigid.m
low_level_examples\get_example_data.m