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Description: 随着人类基因组计划的实施，通过基因组测序，蛋白质序列测定结构解析等实验，分子生物学家提供了大量的有关生物分子的原始数据，需要利用现代计算技术对这些原始数据进行收集、整理、管理以便于检索使用。而为了解释和理解这些数据，还需要对数据进行比对、分析，建立计算模型，进行仿真、预测与验证，因而出现生物信息学，它的出现，极大的促进了分子生物学的发展。-With the human genome project implementation, through genome sequencing, protein sequencing experiments such as structural analysis, molecular biologists to provide a large amount of biological molecules of the original data, the need to use modern technology to these raw data collection, collation and management in order to facilitate retrieval use. To explain and understand these data, and data need to be compared to analysis, model, simulation, prediction and validation, therefore, bioinformatics, and its emergence has greatly promoted the development of molecular biology.
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Size: 312320 |
Author: lihao8397 |
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Description: 生物大分子如DNA 蛋白质等是螺旋结构在细胞层次上细胞微管
呈螺旋状凡由微管组成的纤毛中心体以及植物输导组织中的导管
管胞也是螺旋状在生物体的外表如植物的萝藤等都是螺旋形的
因而叶序呈螺旋线排列是生物分形外显性的结果-biological macromolecules such as DNA, protein helix structure of the cell level cell microtubules were spiral where micro-tubes from the cilia center body and plant Transportation Organization of catheter tracheid also spiral in the appearance of organisms such as plants are Broten as a result of spiral phyllotaxis spiraling line with biological outside Fractal Dominant results
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Size: 79872 |
Author: ltt |
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Description: 用于蛋白质数据生成分类数据的转换。做PSS（Protein Secondary Structure prediction)的可以参考一下。
-for protein production data disaggregated data conversion. Do PSS (Protein Secondary Structure prediction ) can be examined.
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Size: 7168 |
Author: 罗迪君 |
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Description: This the implementation of structural SVM for training complex alignment models for protein sequence alignment, especially for homology modeling. The structural SVM algorithm can incorporate many relevant features like secondary structure, relative exposed surface area, profiles and their various interaction into the alignment model. It was developed under Linux and compiles under gcc, built upon the svm^light software by Thorsten Joachims.
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Size: 135168 |
Author: 王强 |
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Description: 这是一个计算氨基酸物理化学性质的程序，可以用于研究蛋白质的性质-This is a calculation of physical and chemical properties of amino acid procedures, can be used to study the nature of protein
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Size: 2048 |
Author: |
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Description: 一个用于蛋白质序列分类的profile hmm的Perl代码-One for protein sequence classification of the Perl code profile hmm
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Size: 3072 |
Author: lyreau |
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Description: 用OpenGL,VC++和cg实现蛋白质结构的GPU计算-Using OpenGL, VC++ And cg protein structure realize the GPU computing
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Size: 133120 |
Author: liyuwen |
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Description: C-package of "Long Short-Term Memory" for Protein
classification
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Size: 592896 |
Author: 徐琳 |
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Description: 在matlab开发环境下完成，基于区域生长的人脑蛋白质分割算法-In matlab to complete development environment, based on the regional growth of the human brain protein segmentation algorithm
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Size: 1024 |
Author: renyh |
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Description: This code is for network visualization of protein-protein interaction
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Size: 4570112 |
Author: lionking0000 |
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Description: Protein analysis tools. you can compute the protein regulatory network or print the figure.
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Size: 56654848 |
Author: leopard |
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Description: 双序列比对:全局比对或局部比对算法，针对蛋白质序列或核酸序列-This program will do Needle global or Smith-Waterman local alignment for two protein sequences or DNA sequences
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Size: 7168 |
Author: crazy |
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Description: 利用svm结合向量机实现蛋白质相互作用预测-Svm vector machine achieved with the use of protein-protein interaction prediction
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Size: 349184 |
Author: 程节华 |
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Description: 2009年剑桥出版社新书《Protein Interaction Networks》，生物信息学方面，全面介绍了PPI网络相关的算法。完美PDF格式，294页。官网介绍：http://www.cambridge.org/catalogue/catalogue.asp?isbn=9780521888950-2009 Cambridge University Press book, " Protein Interaction Networks" , bio-informatics, a comprehensive introduction to PPI network-related algorithms. The perfect PDF format, 294. Official website Description: http://www.cambridge.org/catalogue/catalogue.asp?isbn=9780521888950
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Size: 2345984 |
Author: dengyue |
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Description: 用于确定分析蛋白质序列上编码区的一个程序，算法虽然有点过时，但还有些参考价值。-Is used to determine the protein sequence analysis of the coding region of a program, algorithm though a bit outdated, but some reference value.
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Size: 4096 |
Author: zmma |
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Description: 运用主成分分析算法对蛋白质序列进行分类程序-classfy for protein by principal analysis algrithm
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Size: 1024 |
Author: guangyu |
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Description: 生物信息学里用到的用java 3D 编成可视化程序的时候需要的知识。-Used in bioinformatics using java 3D visualization program when compiled knowledge needed.
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Size: 1999872 |
Author: quanxi |
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Description: UGENE is a free cross-platform genome analysis suite.
Main features:
Multiple sequence alignment using MUSCLE 3,4 and KAlign
HMM profiles build and search, based on the source of HMMER 2 and HMMER 3
PCR Primers design using Primer 3
Protein secondary structure prediction using GOR IV and PSIPRED
Phylogenetic analysis with Phylip
Search for restriction enzymes and integration with REBASE
Extremely fast repeat finder
DNA reference assembly using Bowtie
Search for transcription factor binding sites using SITECON
Protein back translation
ORF finder
Complete Smith-Waterman algorithm implementation
Comparing genomes using dotplot view.
-UGENE is a free cross-platform genome analysis suite.
Main features:
Multiple sequence alignment using MUSCLE 3,4 and KAlign
HMM profiles build and search, based on the source of HMMER 2 and HMMER 3
PCR Primers design using Primer 3
Protein secondary structure prediction using GOR IV and PSIPRED
Phylogenetic analysis with Phylip
Search for restriction enzymes and integration with REBASE
Extremely fast repeat finder
DNA reference assembly using Bowtie
Search for transcription factor binding sites using SITECON
Protein back translation
ORF finder
Complete Smith-Waterman algorithm implementation
Comparing genomes using dotplot view.
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Size: 12673024 |
Author: baaaa |
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Description: 本程序用作定位以及确认蛋白质编码区域，采用Modified Gabor-wavelet 变换的理论来实施的计算。-Identification of protein coding regions using the Modified Gabor-wavelet transform.
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Size: 52224 |
Author: Tu Shu |
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Description: Summary: InterPreTS (Interaction Prediction through Tertiary Structure) is a web-based version of our method for predicting protein-protein interactions (Aloy and Russell, 2002, Proc. Natl Acad. Sci. USA, 99, 5896-5901). Given a pair of query sequences, we first search for homologues in a database of interacting domains (DBID) of known three-dimensional complex structures. Pairs of sequences homologous to a known interacting pairSummary: InterPreTS (Interaction Prediction through Tertiary Structure) is a web-based version of our method for predicting protein-protein interactions (Aloy and Russell, 2002, Proc. Natl Acad. Sci. USA, 99, 5896-5901). Given a pair of query sequences, we first search for homologues in a database of interacting domains (DBID) of known three-dimensional complex structures. -Summary: InterPreTS (Interaction Prediction through Tertiary Structure) is a web-based version of our method for predicting protein-protein interactions (Aloy and Russell, 2002, Proc. Natl Acad. Sci. USA, 99, 5896-5901). Given a pair of query sequences, we first search for homologues in a database of interacting domains (DBID) of known three-dimensional complex structures. Pairs of sequences homologous to a
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Size: 718848 |
Author: wx |
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