Description: 生物学序列比对软件，与blast相比能容许gap的存在，寻找SV的利器！-Biological sequence alignment software, compared with the blast to allow the existence of gap to find the SV tool! Platform: |
Size: 2551808 |
Author:aquaskyline |
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Description: Java语言编写的生物信息学综合工具软件，它提供了一个统一的界面调用ncbi-blast、clustalw、几个phylip程序、chromtree和treeview 程序，还提供了多序列比对编辑等其他功能。需要安装Java环境、biojava 1.4p1，2.6M，及以上各个独立程序。-Written in Java language integrated bioinformatics tools, which provides a unified interface called ncbi-blast, clustalw, several phylip program, chromtree and the treeview program also provides a multiple sequence alignment editing and other features. Need to install the Java environment, biojava 1.4p1, 2.6M, and above all stand-alone program. Platform: |
Size: 2643968 |
Author:sxy |
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Description: 可以用来进行DNA翻译，序列比对，限制酶消化，提交序列进行BLAST，研究项目管理等。提供Jellyfish 1.3的中文使用说明。
-Use, DNA can be translated, sequence alignment, restriction enzyme digestion and sequence submitted to BLAST, research project management. Provide Jellyfish 1.3 instructions in Chinese. Platform: |
Size: 9356288 |
Author:sxy |
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Description: blast是目前进行生物序列比对的经典软件，本书介绍了blast的基本原理。-Blast is present in biological sequence alignment of the classic software, this book introduces the basic principle of blast. Platform: |
Size: 1430528 |
Author:李娟娟 |
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Description: 为了加入这个网站，我把心血分享给大家，绝对都是原创！
A：mkdatabas0.cpp 做blast前对大的非冗余NR或者是uniref数据库的预处理。为每条序列计算出等长的（长度为20*19/2=210）的数值数组。用来后期比较各个序列间的距离做准备。
B：mkdatabas.cpp 是通过比较要blast对象的那条序列和reference序列的距离，提出距离过远序列。用得到的新数据库做blast。
C：dl_fa.pl程序比较简单，但很实用，可以批量的从网站下载想要的fasta序列
D：scop40_pdbFold.pl里面内容比较丰富，批量做两两序列的比对，根据比对结果处理dssp文件
E：专门针对蛋白二级结构固定的格式文件即DSSP文件所设计的一个脚本。可以根据自己的需要调节数组，选取想要的内容。并做其他操作，比如本脚本就是和一级序列比对（即needlman）结果结合的一个脚本。-To join this site, I put effort to share to you, are absolutely original! A: mkdatabas0.cpp do before blast pretreatment on large non-redundant NR or uniref database. Calculated for each sequence of equal length (a length of 20* 19/2 = 210) of the array of values. Used to compare the distance between each sequence between late to prepare. B: mkdatabas.cpp is by comparison to the distance blast piece sequences and reference sequences of objects, the proposed distance is too far sequence. Do with the new database blast obtained. C: dl_fa.pl procedure is relatively simple, but very practical, you can batch download from the Web site you want fasta sequence D: scop40_pdbFold.pl which is rich in content, bulk do pairwise sequence alignment, according to the results of treatment than dssp file E: That is a script file DSSP designed specifically for protein secondary structure fixed format files. The array can be adjusted according to your needs, select the desired content. And do other opera Platform: |
Size: 6144 |
Author: |
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