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Description: fastDNAml is an attempt to solve the same problem as DNAML, but to do so
faster and using less memory, so that larger trees and/or more bootstrap
replicates become tractable. Much of fastDNAml is merely a recoding of the
PHYLIP 3.3 DNAML program from PASCAL to C.
-fastDNAml is an attempt to solve the same pr oblem as DNAML. but to do so faster and using less memory, so that larger trees and / or more bootstrap repl icates become tractable. Much of fastDNAml is m erely a recoding of the program resistant 3.3 DNAML from PASCAL to C.
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Size: 151338 |
Author: ok8848 |
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Description: fastDNAml is an attempt to solve the same problem as DNAML, but to do so
faster and using less memory, so that larger trees and/or more bootstrap
replicates become tractable. Much of fastDNAml is merely a recoding of the
PHYLIP 3.3 DNAML program from PASCAL to C.
-fastDNAml is an attempt to solve the same pr oblem as DNAML. but to do so faster and using less memory, so that larger trees and/or more bootstrap repl icates become tractable. Much of fastDNAml is m erely a recoding of the program resistant 3.3 DNAML from PASCAL to C.
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Size: 151552 |
Author: ok8848 |
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Description: 我在此介绍几个进化树分析及其相关软件的使用和应用范围。这几个软件分别是PHYLIP、PUZZLE、PAUP、TREEVIEW、CLUSTALX和PHYLO-WIN（LINUX）。-I would like to introduce some evolutionary tree analysis and related software use and applications. This is some software PHYLIP, PUZZLE, PAUP, TREEVIEW, CLUSTALX and PHYLO-WIN (LINUX).
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Size: 180224 |
Author: sunny |
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Description: 这篇文章，详细的介绍了当前国际最流行的 生物进化树软件使用说明，中文版！-This article, a detailed introduction of the current international the most popular biology evolutionary tree software to use that version of English!
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Size: 5120 |
Author: sunny |
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Description: Java语言编写的生物信息学综合工具软件，它提供了一个统一的界面调用ncbi-blast、clustalw、几个phylip程序、chromtree和treeview 程序，还提供了多序列比对编辑等其他功能。需要安装Java环境、biojava 1.4p1，2.6M，及以上各个独立程序。-Written in Java language integrated bioinformatics tools, which provides a unified interface called ncbi-blast, clustalw, several phylip program, chromtree and the treeview program also provides a multiple sequence alignment editing and other features. Need to install the Java environment, biojava 1.4p1, 2.6M, and above all stand-alone program.
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Size: 2643968 |
Author: sxy |
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Description: 图形化多序列比对编辑器,能够读各种比对格式(MSF, CLUSTAL, FASTA, PHYLIP, MASE),可手动编辑队列。-Graphical multiple sequence alignment editor, able to read various alignment formats (MSF, CLUSTAL, FASTA, PHYLIP, MASE), you can manually edit the queue.
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Size: 2657280 |
Author: sxy |
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Description: UGENE is a free cross-platform genome analysis suite.
Main features:
Multiple sequence alignment using MUSCLE 3,4 and KAlign
HMM profiles build and search, based on the source of HMMER 2 and HMMER 3
PCR Primers design using Primer 3
Protein secondary structure prediction using GOR IV and PSIPRED
Phylogenetic analysis with Phylip
Search for restriction enzymes and integration with REBASE
Extremely fast repeat finder
DNA reference assembly using Bowtie
Search for transcription factor binding sites using SITECON
Protein back translation
ORF finder
Complete Smith-Waterman algorithm implementation
Comparing genomes using dotplot view.
-UGENE is a free cross-platform genome analysis suite.
Main features:
Multiple sequence alignment using MUSCLE 3,4 and KAlign
HMM profiles build and search, based on the source of HMMER 2 and HMMER 3
PCR Primers design using Primer 3
Protein secondary structure prediction using GOR IV and PSIPRED
Phylogenetic analysis with Phylip
Search for restriction enzymes and integration with REBASE
Extremely fast repeat finder
DNA reference assembly using Bowtie
Search for transcription factor binding sites using SITECON
Protein back translation
ORF finder
Complete Smith-Waterman algorithm implementation
Comparing genomes using dotplot view.
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Size: 12673024 |
Author: baaaa |
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Description: 该matlab程序用于DNA约简，内涵GUI-his package includes a modified version of dnapars.exe Phylip 3.6. The orignal dnapars,exe uses a menu for settings of parameters. I changed it into a command-line driven one, called mbetoolbox_dnapars.exe.
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Size: 313344 |
Author: 许飞 |
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Description: 将一般距离矩阵转换成phylip矩阵的perl脚本。(martix to phylip martix)
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Size: 2048 |
Author: xxlplaladin |
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