This toolbox includes routines for using principal component analysis (PCA) and independent component analysis (ICA) to extract cellular signals from imaging data sets. A full description and validation of the method is provided in the paper, "Automated Analysis of Cellular Signals from Large-Scale Calcium Imaging Data," Neuron, 63:747 (2009): http://tinyurl.com/cellsort

CellSort 1.1
............\.DS_Store
............\CellsortApplyFilter.m
............\CellsortChoosePCs.m
............\CellsortFindspikes.m
............\CellsortICA.m
............\CellsortICA_Optimize.m
............\CellsortICA_Optimize.m~
............\CellsortICAplot.m
............\CellsortPCA.m
............\CellsortPlotPCspectrum.m
............\CellsortSegmentation.m
............\doc
............\...\.DS_Store
............\...\CellsortApplyFilter.html
............\...\CellsortChoosePCs.html
............\...\CellsortFindspikes.html
............\...\CellsortICA.html
............\...\CellsortICAplot.html
............\...\CellsortPCA.html
............\...\CellsortPlotPCspectrum.html
............\...\CellsortSegmentation.html
............\...\images
............\...\......\alpha.png
............\...\......\c++.png
............\...\......\c.png
............\...\......\demoicon.gif
............\...\......\down.png
............\...\......\fortran.png
............\...\......\hp.png
............\...\......\left.png
............\...\......\Linking to Harvard Library E-Resources - Harvard College Library.webarchive
............\...\......\linux.png
............\...\......\matlabicon.gif
............\...\......\mex.png
............\...\......\Mukamel1a.jpg
............\...\......\right.png
............\...\......\sgi.png
............\...\......\simulinkicon.gif
............\...\......\solaris.png
............\...\......\up.png
............\...\......\windows.png
............\...\index.html
............\...\m2html.css
............\...\TacoHTMLEditTemp.html
............\README.rtf
__MACOSX
........\CellSort 1.1
........\............\._.DS_Store
........\............\._CellsortApplyFilter.m
........\............\._CellsortChoosePCs.m
........\............\._CellsortFindspikes.m
........\............\._CellsortICA.m
........\............\._CellsortICA_Optimize.m
........\............\._CellsortICAplot.m
........\............\._CellsortPCA.m
........\............\._CellsortPlotPCspectrum.m
........\............\._CellsortSegmentation.m
........\............\doc
........\............\...\._.DS_Store
........\............\...\images
........\............\...\......\._alpha.png
........\............\...\......\._c++.png
........\............\...\......\._c.png
........\............\...\......\._demoicon.gif
........\............\...\......\._down.png
........\............\...\......\._fortran.png
........\............\...\......\._hp.png
........\............\...\......\._left.png
........\............\...\......\._Linking to Harvard Library E-Resources - Harvard College Library.webarchive
........\............\...\......\._linux.png
........\............\...\......\._matlabicon.gif
........\............\...\......\._mex.png
........\............\...\......\._Mukamel1a.jpg
........\............\...\......\._right.png
........\............\...\......\._sgi.png
........\............\...\......\._simulinkicon.gif
........\............\...\......\._solaris.png
........\............\...\......\._up.png
........\............\...\......\._windows.png
........\............\...\._m2html.css
........\............\._README.rtf
license.txt

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