In the field of biology, fastsemsim is used to calculate the similarity of gene ontology gene ontology, and the results can be used to measure the relationship between different genes.

fastsemsim-0.9.4\fastsemsim\data\.DS_Store
................\..........\....\ACs\DO_human_Osborne_BMC_2010.08.24.txt
................\..........\....\...\DO_human_Peng_NAR_2014.10.12.txt
................\..........\....\...\gene_association.goa_arabidopsis
................\..........\....\...\gene_association.goa_fly
................\..........\....\...\GO_gene_association.goa_arabidopsis_2014.10.12.gz
................\..........\....\...\GO_gene_association.goa_fly_2014.10.12.gz
................\..........\....\...\GO_gene_association.goa_human_2014.10.12.gz
................\..........\....\...\GO_gene_association.goa_mouse_2014.10.12.gz
................\..........\....\...\GO_gene_association.goa_rat_2014.10.12.gz
................\..........\....\...\GO_gene_association.goa_worm_2014.10.12.gz
................\..........\....\...\GO_gene_association.goa_zebrafish_2014.10.12.gz
................\..........\....\dataset.py
................\..........\....\dataset.pyc
................\..........\....\dataset.txt
................\..........\....\input_dataset_processing\.DS_Store
................\..........\....\........................\DOA.sh
................\..........\....\........................\GOA.sh
................\..........\....\........................\Os.sh
................\..........\....\Os\CellOntology_2014.10.13.obo
................\..........\....\..\DiseaseOntology_2014.10.13.obo
................\..........\....\..\GeneOntology_2014.10.13.obo-xml.gz
................\..........\....\..\GeneOntology_2014.10.27.obo
................\..........\....\..\pato_2014.09.09.obo
................\..........\....\parser.pyc
................\..........\....\__init__.py
................\..........\....\__init__.pyc
................\..........\examples\.A.swp
................\..........\........\.B.swp
................\..........\........\.DS_Store
................\..........\........\data\DO_list_objset_query.txt
................\..........\........\....\DO_list_query.txt
................\..........\........\....\GO_fly_list_query.txt
................\..........\........\....\GO_fly_pairs_query.txt
................\..........\........\example_cmdline.sh
................\..........\........\example_cmdline_params.txt
................\..........\........\load_annotation_corpus.py
................\..........\........\load_annotation_corpus.pyc
................\..........\........\load_ontology.py
................\..........\........\load_ontology.pyc
................\..........\........\README
................\..........\........\__init__.py
................\..........\........\__init__.pyc
................\..........\fastsemsim_cmdline.py
................\..........\Ontology\AnnotationCorpus.py
................\..........\........\CellOntology.py
................\..........\........\DiseaseOntology.py
................\..........\........\FFOntology.py
................\..........\........\GAF2AnnotationCorpus.py
................\..........\........\GeneOntology.py
................\..........\........\GOAnnotationCorpus.py
................\..........\........\ontologies.py
................\..........\........\Ontology.py
................\..........\........\PlainAnnotationCorpus.py
................\..........\........\__init__.py
................\..........\SemSim\avgSemSim.py
................\..........\......\BMASemSim.py
................\..........\......\CosineSemSim.py
................\..........\......\CzekanowskiDiceSemSim.py
................\..........\......\DiceSemSim.py
................\..........\......\GSESAMESemSim.py
................\..........\......\JaccardSemSim.py
................\..........\......\JiangConrathSemSim.py
................\..........\......\LinSemSim.py
................\..........\......\maxSemSim.py
................\..........\......\MixSemSim.py
................\..........\......\ObjSemSim.py
................\..........\......\ObjSetSemSim.py
................\..........\......\old_SemSim.py
................\..........\......\old_SemSimMeasures.py
................\..........\......\ResnikS

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