Markov Model C Language for Biological Sequence Analysis of good reference java and the versions of each another

modhmmc
.......\BasicMsaTMHMMCreator.java
.......\BetaGamma.java
.......\Cluster.java
.......\Constants.java
.......\DataReader.java
.......\DataReaderMultiAlpha.java
.......\Emission.java
.......\Forward_alt.java
.......\Forward_std.java
.......\HMM.java
.......\HMMConstruct.java
.......\hmmer2modhmm.java
.......\HMMSaver.java
.......\InternalInitDistrib.java
.......\MatchColumnIdentifyer.java
.......\ModelMaker.java
.......\Module.java
.......\MSA.java
.......\P.java
.......\Polynomial.java
.......\Profile7.java
.......\Profile9.java
.......\ProfileCreator.java
.......\ProfileHMMParameterEstimator.java
.......\ShadowMsaTMHMMCreator.java
.......\SingleLoop.java
.......\SingleNode.java
.......\StandardTMHMMCreator.java
.......\StandardTopologyModelerCreator.java
.......\Transition.java
.......\U_Turn.java
.......\Vertex.java

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