File list (Check if you may need any files):
source
......\.FBCIndex
......\.gdb_history
......\applet.html
......\aREADME.txt
......\build.xml
......\ij
......\..\CommandListener.java
......\..\CompositeImage.java
......\..\Executer.java
......\..\gui
......\..\...\ColorChooser.java
......\..\...\DialogListener.java
......\..\...\FreehandRoi.java
......\..\...\GenericDialog.java
......\..\...\GUI.java
......\..\...\HistogramWindow.java
......\..\...\HTMLDialog.java
......\..\...\ImageCanvas.java
......\..\...\ImageLayout.java
......\..\...\ImageWindow.java
......\..\...\Line.java
......\..\...\MessageDialog.java
......\..\...\MultiLineLabel.java
......\..\...\NewImage.java
......\..\...\OvalRoi.java
......\..\...\Plot.java
......\..\...\PlotWindow.java
......\..\...\PointRoi.java
......\..\...\PolygonRoi.java
......\..\...\ProfilePlot.java
......\..\...\ProgressBar.java
......\..\...\Roi.java
......\..\...\RoiBrush.java
......\..\...\SaveChangesDialog.java
......\..\...\ShapeRoi.java
......\..\...\StackWindow.java
......\..\...\TextRoi.java
......\..\...\Toolbar.java
......\..\...\TrimmedButton.java
......\..\...\WaitForUserDialog.java
......\..\...\Wand.java
......\..\...\YesNoCancelDialog.java
......\..\IJ.java
......\..\ImageJ.java
......\..\ImageJApplet.java
......\..\ImageListener.java
......\..\ImagePlus.java
......\..\ImageStack.java
......\..\io
......\..\..\BitBuffer.java
......\..\..\DirectoryChooser.java
......\..\..\FileInfo.java
......\..\..\FileOpener.java
......\..\..\FileSaver.java
......\..\..\ImageReader.java
......\..\..\ImageWriter.java
......\..\..\ImportDialog.java
......\..\..\OpenDialog.java
......\..\..\Opener.java
......\..\..\PluginClassLoader.java
......\..\..\RandomAccessStream.java
......\..\..\RoiDecoder.java
......\..\..\RoiEncoder.java
......\..\..\SaveDialog.java
......\..\..\TextEncoder.java
......\..\..\TiffDecoder.java
......\..\..\TiffEncoder.java
......\..\LookUpTable.java
......\..\macro
......\..\.....\ExtensionDescriptor.java
......\..\.....\FunctionFinder.java
......\..\.....\Functions.java
......\..\.....\Interpreter.java
......\..\.....\MacroConstants.java
......\..\.....\MacroExtension.java
......\..\.....\MacroRunner.java
......\..\.....\Program.java
......\..\.....\ReturnException.java
......\..\.....\Symbol.java
......\..\.....\Tokenizer.java
......\..\.....\Variable.java
......\..\Macro.java
......\..\measure
......\..\.......\Calibration.java
......\..\.......\CurveFitter.java
......\..\.......\Measurements.java
......\..\.......\ResultsTable.java
......\..\.......\SplineFitter.java
......\..\Menus.java
......\..\plugin
......\..\......\AboutBox.java
......\..\......\Animator.java
......\..\......\AVI_Reader.java
......\..\......\BMP_Reader.java
......\..\......\BMP_Writer.java
......\..\......\BrowserLauncher.java
......\..\......\CanvasResizer.java
......\..\......\ClassChecker.java
......\..\......\Clipboard.java