File list (Check if you may need any files):
.svn
....\prop-base
....\props
....\text-base
....\tmp
....\...\prop-base
....\...\props
....\...\text-base
....\...\wcprops
....\wcprops
external_dll
............\gr
............\..\GL4JavaGljMSJDirect.dll
............\..\GL4JavaJauGljJNI.dll
............\..\GL4JavaJauGljJNI14.dll
............\..\README.txt
external_jar
............\gr
............\..\gl4java-glffonts.jar
............\..\gl4java-glutfonts.jar
............\..\gl4java.jar
............\..\gr.jar
............\..\jaxp.jar
............\..\parser.jar
............\j3d
............\...\j3daudio.jar
............\...\j3dcore.jar
............\...\j3dutils.jar
............\...\vecmath.jar
............\jmf
............\...\jmf.jar
............\ptolemy
............\.......\compat.jar
............\.......\demo.jar
............\.......\gui.jar
............\.......\plot.jar
............\.......\plotapplet.jar
............\.......\plotapplication.jar
............\.......\plotml.jar
............\.......\plotmlapplet.jar
............\.......\pxgraphapplet.jar
............\.......\render.jar
............\.......\xml.jar
............\starfire
............\........\StarfireExt.jar
input
.....\burns
.....\.....\rbar_burns.jat
.....\.....\rbar_burns.txt
.....\.....\vbar_burns.jat
.....\.....\vbar_burns.txt
.....\rinex.n
jat
...\alg
...\...\DoubleArrayFunction.java
...\...\estimators
...\...\..........\EstSTM.java
...\...\..........\ExtendedKalmanFilter.java
...\...\..........\MeasurementData.java
...\...\..........\MeasurementModel.java
...\...\..........\ProcessModel.java
...\...\integrators
...\...\...........\Derivatives.java
...\...\...........\EquationsOfMotion.java
...\...\...........\LinePrinter.java
...\...\...........\package.html
...\...\...........\Printable.java
...\...\...........\RK78F_old.java
...\...\...........\RKF78_StoppingCondition.java
...\...\...........\RungeKutta4.java
...\...\...........\RungeKutta8.java
...\...\...........\RungeKutta8_StoppingCondition.java
...\...\...........\RungeKuttaFehlberg78.java
...\...\...........\StoppingCondition.java
...\...\Jacobian.java
...\...\NLESolver.java
...\...\opt
...\...\...\DFP.java
...\...\...\GradientSearch.java
...\...\...\LBFGS
...\...\...\.....\LBFGS.java
...\...\...\.....\Mcsrch.java
...\...\...\.....\sdrive.f2c.out
...\...\...\.....\Sdrive.java
...\...\...\.....\Sdrive.java.out
...\...\...\LineSearch.java
...\...\...\NumDerivs.java
...\...\...\optimize.java
...\...\...\package.html
...\...\...\test
...\...\...\....\DFP_test.java
...\...\...\....\functions
...\...\...\....\.........\Function1.java
...\...\...\....\.........\Function2.java
...\...\...\....\.........\Function3.java
...\...\...\....\.........\Function4.java
...\...\...\....\.........\Function5.java
...\...\...\....\.........\QuadraticFunction.java
...\...\...\....\.........\Rosenbrock.java
...\...\...\....\GradientSearch_test.java